PDB entry 6gzc

View 6gzc on RCSB PDB site
Description: heterotetrameric katanin p60:p80 complex
Deposited on 2018-07-03, released 2019-08-07
The last revision was dated 2019-09-18, with a file datestamp of 2019-09-13.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Katanin p80 WD40 repeat-containing subunit B1
    Species: Mus musculus [TaxId:10090]
    Gene: Katnb1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8BG40 (Start-211)
      • conflict (108)
      • conflict (144)
  • Chain 'B':
    Compound: Katanin p60 ATPase-containing subunit A1
    Species: Mus musculus [TaxId:10090]
    Gene: Katna1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Katanin p80 WD40 repeat-containing subunit B1
    Species: Mus musculus [TaxId:10090]
    Gene: Katnb1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8BG40
      • conflict (108)
      • conflict (144)
  • Chain 'D':
    Compound: Katanin p60 ATPase-containing subunit A1
    Species: Mus musculus [TaxId:10090]
    Gene: Katna1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PEG, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gzcA (A:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsqqaelvdedamsqirkghdtmfvvlt
srhknldtvravwttgdiktsvdsavaindlsvvvdllnivnqkaslwaldlcttvlpqi
ekllqskyesyvqtgctslklilqaflplitdilaappsvgvdisreerlhkcrlcfkql
ksisglvksksglsgrhgsafrelhllmasld

    Sequence, based on observed residues (ATOM records):
    >6gzcA (A:)
vdedamsqirkghdtmfvvltsrhknldtvravwttgdiktsvdsavaindlsvvvdlln
ivnqkaslwaldlcttvlpqiekllqskyesyvqtgctslklilqaflplitdilaapdi
sreerlhkcrlcfkqlksisglvksksglsgsafrelhllmasld

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gzcB (B:)
mgmslqmivenvklareyallgnydsamvyyqgvldqmnkylysvkdthlrqkwqqvwqe
inveakqvkdimktlesfkl

    Sequence, based on observed residues (ATOM records):
    >6gzcB (B:)
mslqmivenvklareyallgnydsamvyyqgvldqmnkylysvkdthlrqkwqqvwqein
veakqvkdimktlesfk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gzcC (C:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsqqaelvdedamsqirkghdtmfvvlt
srhknldtvravwttgdiktsvdsavaindlsvvvdllnivnqkaslwaldlcttvlpqi
ekllqskyesyvqtgctslklilqaflplitdilaappsvgvdisreerlhkcrlcfkql
ksisglvksksglsgrhgsafrelhllmasld

    Sequence, based on observed residues (ATOM records):
    >6gzcC (C:)
lvdedamsqirkghdtmfvvltsrhknldtvravwttgdiktsvdsavaindlsvvvdll
nivnqkaslwaldlcttvlpqiekllqskyesyvqtgctslklilqaflplitdilaavd
isreerlhkcrlcfkqlksisglvksksggsafrelhllmas

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6gzcD (D:)
mgmslqmivenvklareyallgnydsamvyyqgvldqmnkylysvkdthlrqkwqqvwqe
inveakqvkdimktlesfkl

    Sequence, based on observed residues (ATOM records):
    >6gzcD (D:)
slqmivenvklareyallgnydsamvyyqgvldqmnkylysvkdthlrqkwqqvwqeinv
eakqvkdimktlesfk