PDB entry 6gy9

View 6gy9 on RCSB PDB site
Description: Fucose-functionalized precision glycomacromolecules targeting human norovirus capsid protein
Class: viral protein
Keywords: Norovirus, GII.10, P domain, fucose, triazol, VIRAL PROTEIN
Deposited on 2018-06-28, released 2018-08-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.83 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Norwalk virus [TaxId:11983]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6gy9a_
  • Chain 'B':
    Compound: capsid protein
    Species: Norwalk virus [TaxId:11983]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6gy9b_
  • Heterogens: KBA, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6gy9A (A:)
kpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgic
afrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrntn
tvpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvda
nshfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqe
wvqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfr
fdswvnqfytlapm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6gy9B (B:)
kpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgic
afrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrntn
tvpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvda
nshfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqe
wvqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfr
fdswvnqfytlapm

    Sequence, based on observed residues (ATOM records): (download) 
    >6gy9B (B:)
kpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgic
afrgkvtqqthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrntlpanrahe
aviatyspkftpklgniqfstwetqdvssgqptkftpvglasvdanshfdqwtlpsysga
ltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqewvqhlyqesapslsd
valvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfrfdswvnqfytlapm