PDB entry 6gxs

View 6gxs on RCSB PDB site
Description: crystal structure of cv39l lectin from chromobacterium violaceum at 1.8 a resolution
Deposited on 2018-06-27, released 2019-12-04
The last revision was dated 2020-05-13, with a file datestamp of 2020-05-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CV39L lectin
    Species: Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) [TaxId:243365]
    Gene: CV_1052
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7NZ70 (14-End)
      • expression tag (13)
  • Chain 'B':
    Compound: CV39L lectin
    Species: Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) [TaxId:243365]
    Gene: CV_1052
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7NZ70 (14-375)
      • expression tag (13)
  • Chain 'C':
    Compound: CV39L lectin
    Species: Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) [TaxId:243365]
    Gene: CV_1052
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: CV39L lectin
    Species: Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) [TaxId:243365]
    Gene: CV_1052
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, EDO, PEG, 1PE, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gxsA (A:)
mhhhhhhenlyfqsssqfhglaigngnsnylqvlglanitdtayltdwqdsggnwhagfa
lpvpsdypkghffqlttgvgnsnylqvlgagedgnpylvswqdgsgkwhggmplpkpsgy
sggplvtgignsnylqvigarvesspylvawqdnggnwhagmplpnpsgyaggfqqlatg
ngndhflqvvgvgndgnaylvtwqnaqgqwspgfalpkpsgysgtftqlatgvgngnflq
vlgigtdgnaylvawqdnggnwhpgfalpkpsgyngtfaklvtgignsnylqvfgigsng
vaylvswqdsggnwhggltlpqpsgyngsfsqlaagngnshylqvvgtdaqgnvylvswq
dsegkwhagfelpras

    Sequence, based on observed residues (ATOM records):
    >6gxsA (A:)
sssqfhglaigngnsnylqvlglanitdtayltdwqdsggnwhagfalpvpsdypkghff
qlttgvgnsnylqvlgagedgnpylvswqdgsgkwhggmplpkpsgysggplvtgignsn
ylqvigarvesspylvawqdnggnwhagmplpnpsgyaggfqqlatgngndhflqvvgvg
ndgnaylvtwqnaqgqwspgfalpkpsgysgtftqlatgvgngnflqvlgigtdgnaylv
awqdnggnwhpgfalpkpsgyngtfaklvtgignsnylqvfgigsngvaylvswqdsggn
whggltlpqpsgyngsfsqlaagngnshylqvvgtdaqgnvylvswqdsegkwhagfelp
ra

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gxsB (B:)
mhhhhhhenlyfqsssqfhglaigngnsnylqvlglanitdtayltdwqdsggnwhagfa
lpvpsdypkghffqlttgvgnsnylqvlgagedgnpylvswqdgsgkwhggmplpkpsgy
sggplvtgignsnylqvigarvesspylvawqdnggnwhagmplpnpsgyaggfqqlatg
ngndhflqvvgvgndgnaylvtwqnaqgqwspgfalpkpsgysgtftqlatgvgngnflq
vlgigtdgnaylvawqdnggnwhpgfalpkpsgyngtfaklvtgignsnylqvfgigsng
vaylvswqdsggnwhggltlpqpsgyngsfsqlaagngnshylqvvgtdaqgnvylvswq
dsegkwhagfelpras

    Sequence, based on observed residues (ATOM records):
    >6gxsB (B:)
sssqfhglaigngnsnylqvlglanitdtayltdwqdsggnwhagfalpvpsdypkghff
qlttgvgnsnylqvlgagedgnpylvswqdgsgkwhggmplpkpsgysggplvtgignsn
ylqvigarvesspylvawqdnggnwhagmplpnpsgyaggfqqlatgngndhflqvvgvg
ndgnaylvtwqnaqgqwspgfalpkpsgysgtftqlatgvgngnflqvlgigtdgnaylv
awqdnggnwhpgfalpkpsgyngtfaklvtgignsnylqvfgigsngvaylvswqdsggn
whggltlpqpsgyngsfsqlaagngnshylqvvgtdaqgnvylvswqdsegkwhagfelp
ras

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gxsC (C:)
mhhhhhhenlyfqsssqfhglaigngnsnylqvlglanitdtayltdwqdsggnwhagfa
lpvpsdypkghffqlttgvgnsnylqvlgagedgnpylvswqdgsgkwhggmplpkpsgy
sggplvtgignsnylqvigarvesspylvawqdnggnwhagmplpnpsgyaggfqqlatg
ngndhflqvvgvgndgnaylvtwqnaqgqwspgfalpkpsgysgtftqlatgvgngnflq
vlgigtdgnaylvawqdnggnwhpgfalpkpsgyngtfaklvtgignsnylqvfgigsng
vaylvswqdsggnwhggltlpqpsgyngsfsqlaagngnshylqvvgtdaqgnvylvswq
dsegkwhagfelpras

    Sequence, based on observed residues (ATOM records):
    >6gxsC (C:)
ssqfhglaigngnsnylqvlglanitdtayltdwqdsggnwhagfalpvpsdypkghffq
lttgvgnsnylqvlgagedgnpylvswqdgsgkwhggmplpkpsgysggplvtgignsny
lqvigarvesspylvawqdnggnwhagmplpnpsgyaggfqqlatgngndhflqvvgvgn
dgnaylvtwqnaqgqwspgfalpkpsgysgtftqlatgvgngnflqvlgigtdgnaylva
wqdnggnwhpgfalpkpsgyngtfaklvtgignsnylqvfgigsngvaylvswqdsggnw
hggltlpqpsgyngsfsqlaagngnshylqvvgtdaqgnvylvswqdsegkwhagfelpr
a

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6gxsD (D:)
mhhhhhhenlyfqsssqfhglaigngnsnylqvlglanitdtayltdwqdsggnwhagfa
lpvpsdypkghffqlttgvgnsnylqvlgagedgnpylvswqdgsgkwhggmplpkpsgy
sggplvtgignsnylqvigarvesspylvawqdnggnwhagmplpnpsgyaggfqqlatg
ngndhflqvvgvgndgnaylvtwqnaqgqwspgfalpkpsgysgtftqlatgvgngnflq
vlgigtdgnaylvawqdnggnwhpgfalpkpsgyngtfaklvtgignsnylqvfgigsng
vaylvswqdsggnwhggltlpqpsgyngsfsqlaagngnshylqvvgtdaqgnvylvswq
dsegkwhagfelpras

    Sequence, based on observed residues (ATOM records):
    >6gxsD (D:)
ssqfhglaigngnsnylqvlglanitdtayltdwqdsggnwhagfalpvpsdypkghffq
lttgvgnsnylqvlgagedgnpylvswqdgsgkwhggmplpkpsgysggplvtgignsny
lqvigarvesspylvawqdnggnwhagmplpnpsgyaggfqqlatgngndhflqvvgvgn
dgnaylvtwqnaqgqwspgfalpkpsgysgtftqlatgvgngnflqvlgigtdgnaylva
wqdnggnwhpgfalpkpsgyngtfaklvtgignsnylqvfgigsngvaylvswqdsggnw
hggltlpqpsgyngsfsqlaagngnshylqvvgtdaqgnvylvswqdsegkwhagfelpr
as