PDB entry 6gxc

View 6gxc on RCSB PDB site
Description: bacterial oligosaccharyltransferase pglb in complex with an inhibitory peptide and a reactive lipid-linked oligosaccharide analog
Deposited on 2018-06-27, released 2018-11-14
The last revision was dated 2018-11-14, with a file datestamp of 2018-11-09.
Experiment type: XRAY
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Undecaprenyl-diphosphooligosaccharide--protein glycotransferase
    Species: Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) [TaxId:306263]
    Gene: pglB, Cla_1253
    Database cross-references and differences (RAF-indexed):
    • Uniprot B9KDD4
      • engineered mutation (1)
      • engineered mutation (16)
      • engineered mutation (29)
      • engineered mutation (107)
      • engineered mutation (349)
      • engineered mutation (534)
      • engineered mutation (548-549)
      • engineered mutation (552)
      • engineered mutation (555)
      • engineered mutation (599-601)
      • engineered mutation (609-610)
      • engineered mutation (618)
      • engineered mutation (621)
      • engineered mutation (623)
      • engineered mutation (626)
      • engineered mutation (629)
      • engineered mutation (662)
      • engineered mutation (669)
  • Chain 'B':
    Compound: gly-asp-gln-dab-ala-thr-ppn-gly
    Species: Campylobacter lari RM2100 [TaxId:306263]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GXC (0-7)
  • Heterogens: MN, NA, MES, PEG, FFK

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gxcA (A:)
melqqnftdnnsikytaililiafafsvlarlywvawasefyefffndqlmittndgyaf
aegardmiagfhqpndlsyfgsslstltywlysilpfsfesiilymstffaslivvpiil
iareyklttygfiaallgsiansyynrtmsgyydtdmlvlvlpmlilltfirltinkdif
tlllspvfimiylwwypssyslnfamiglfglytlvfhrkekifyltialmiialsmlaw
qyklalivllfaifafkeekinfymiwalifisililhlsggldpvlyqlkfyvfkasdv
qnlkdaafmyfnvnetimevntidpevfmqrisssvlvfilsfigfilllkdhksmllal
pmlalgfmalraglrftiyavpvmalgfgyflyaffnflekkqiklslrnknilliliaf
fsispalmhiyyyksstvftsyeasilndlknkaqredyvvawwdygypiryysdvktli
dggkhlgkdnffssfvlskeqipaanmarlsveyteksfkenypdvlkamvkdyqktsak
dfleslndpnfkidtpktrdvyiympyrmlrimpvvaqfantnpdngeqekslffsqanp
ldqdkkqgsitldngveisndyrslkiegnsiplkafvdiesitngkfyyneidskaqiy
llylreyksyvildeslynssyiqmfllnqydqdlfeqitndtrakiyrlkrefhhhhhh
hhhh

    Sequence, based on observed residues (ATOM records):
    >6gxcA (A:)
elqqnftdnnsikytaililiafafsvlarlywvawasefyefffndqlmittndgyafa
egardmiagfhqpndlsyfgsslstltywlysilpfsfesiilymstffaslivvpiili
areyklttygfiaallgsiansyynrtmsgyydtdmlvlvlpmlilltfirltinkdift
lllspvfimiylwwypssyslnfamiglfglytlvfhrkekifyltialmiialsmlawq
yklalivllfaifafkeekinfymiwalifisililhlsggldpvlyqlkfyvfkasdvq
nlkdaafmyfnvnetimevntidpevfmqrisssvlvfilsfigfilllkdhksmllalp
mlalgfmalraglrftiyavpvmalgfgyflyaffnflekkqiklslrnknilliliaff
sispalmhiyyyksstvftsyeasilndlknkaqredyvvawwdygypiryysdvktlid
ggkhlgkdnffssfvlskeqipaanmarlsveyteksfkenypdvlkamvkdyqktsakd
fleslndpnfkidtpktrdvyiympyrmlrimpvvaqfantnpdngeqekslffsqanpl
dqgsitldngveisndyrslkiegnsiplkafvdiesitngkfyyneidskaqiyllylr
eyksyvildeslynssyiqmfllnqydqdlfeqitndtrakiyrlk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6gxcB (B:)
gdqaatfg