PDB entry 6gw1

View 6gw1 on RCSB PDB site
Description: GII.10 human norovirus protruding domain in complex with glycochenodeoxycholate (GCDCA)
Class: viral protein
Keywords: Norovirus, GII.10, P domain, GCDCA, HBGA, VIRAL PROTEIN
Deposited on 2018-06-21, released 2018-10-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-01-16, with a file datestamp of 2019-01-11.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Norwalk virus [TaxId:11983]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6gw1a_
  • Chain 'B':
    Compound: capsid protein
    Species: Norwalk virus [TaxId:11983]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6gw1b_
  • Heterogens: CHO, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6gw1A (A:)
kpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgic
afrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrntn
tvpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvda
nshfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqe
wvqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfr
fdswvnqfytlapm

    Sequence, based on observed residues (ATOM records): (download) 
    >6gw1A (A:)
pftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgica
frgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrntnt
gnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvdanshfd
qwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqewvqhl
yqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfrfdswv
nqfytlapm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6gw1B (B:)
kpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgic
afrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrntn
tvpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvda
nshfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqe
wvqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfr
fdswvnqfytlapm

    Sequence, based on observed residues (ATOM records): (download) 
    >6gw1B (B:)
kpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgic
afrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrntn
tgnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvdanshf
dqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqewvqh
lyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfrfdsw
vnqfytlapm