PDB entry 6gv1

View 6gv1 on RCSB PDB site
Description: crystal structure of e.coli multidrug/h+ antiporter mdfa in outward open conformation with bound fab fragment
Deposited on 2018-06-20, released 2018-10-03
The last revision was dated 2018-10-10, with a file datestamp of 2018-10-05.
Experiment type: XRAY
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major Facilitator Superfamily multidrug/H+ antiporter MdfA from E.coli
    Species: Escherichia coli K-12 [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Fab fragment YN1074 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GV1
  • Chain 'L':
    Compound: Fab fragment YN1074 light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GV1 (0-End)
  • Heterogens: SO4

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gv1A (A:)
mqnklasgarlgrqallfplclvlyefstyigndmiqpgmlavveqyqagidwvptsmta
ylaggmflqwllgplsdrigrrpvmlagvvwfivtclaillaqnieqftllrflqgislc
figavgyaaiqesfeeavcikitalmanvaliapllgplvgaawihvlpwegmfvlfaal
aaisffglqrampetatrigeklslkelgrdyklvlkngrfvagalalgfvslpllawia
qspiiiitgeqlssyeygllqvpifgaliagnlllarltsrrtvrsliimggwpimigll
vaaaatvisshaylwmtaglsiyafgiglanaglvrltlfasdmskgtvsaamgmlqmli
ftvgieiskhawlnggnglfnlfnlvngilwlslmviflkdkqmgnsheg

    Sequence, based on observed residues (ATOM records):
    >6gv1A (A:)
qallfplclvlyefstyigndmiqpgmlavveqyqagidwvptsmtaylaggmflqwllg
plsdrigrrpvmlagvvwfivtclaillaqnieqftllrflqgislcfigavgyaaiqes
feeavcikitalmanvaliapllgplvgaawihvlpwegmfvlfaalaaisffglqramp
etatrigeklslkelgrdyklvlkngrfvagalalgfvslpllawiaqspiiiitgeqls
syeygllqvpifgaliagnlllarltsrrtvrsliimggwpimigllvaaaatvisshay
lwmtaglsiyafgiglanaglvrltlfasdmskgtvsaamgmlqmliftvgieiskhawl
nggnglfnlfnlvngilwlslmviflk

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6gv1H (H:)
evqlkesgpglvapsqslsitctvsgfsfsiyglhwvrqppgkglewlgmiwgggrtdyn
salksrlsiskdnsksqvflkmkslqtddtamyycarnsgygnlaywgqgtlvtvsaakt
tppsvyplapgcgdttgssvtlgclvkgyfpesvtvtwnsgslsssvhtfpallqsglyt
msssvtvpsstwpsqtvtcsvahpassttvdkklepsgpistinpcppckechkcp

    Sequence, based on observed residues (ATOM records):
    >6gv1H (H:)
lkesgpglvapsqslsitctvsgfsfsiyglhwvrqppgkglewlgmiwgggrtdynsal
ksrlsiskdnsksqvflkmkslqtddtamyycarnsgygnlaywgqgtlvtvsaakttpp
svyplaptgssvtlgclvkgyfpesvtvtwnsgslsssvhtfpallqsglytmsssvtvp
sstwpsqtvtcsvahpassttvdkklep

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6gv1L (L:)
divmtqspsslsaslgervsltcrasqdigyslnwlqqepdgtikrliyatsnldsgvpk
rfsgsrsgsdysltisslesedfvdyyclqyasspytfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records):
    >6gv1L (L:)
divmtqspsslsaslgervsltcrasqdigyslnwlqqepdgtikrliyatsnldsgvpk
rfsgsrsgsdysltisslesedfvdyyclqyasspytfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnr