SCOPe 2.08: Structural Classification of Proteins

PDB entry 6gsh

View 6gsh on RCSB PDB site
Description: feline calicivirus strain f9
Deposited on 2018-06-14, released 2019-01-16
The last revision was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: EM
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: vp1
Species: Feline calicivirus [TaxId:11978]
Database cross-references and differences (RAF-indexed):
- Uniprot A2T4P8
  - conflict (132)
  - conflict (138)
  - conflict (147-148)
  - conflict (303)
  - conflict (318)
  - conflict (344)
  - conflict (354)
  - conflict (356)
  - conflict (362)
  - conflict (391)
  - conflict (401)
  - conflict (428)
  - conflict (439-441)
  - conflict (446)
  - conflict (448-451)
  - conflict (453)
  - conflict (455-456)
  - conflict (471)
  - conflict (492-494)
  - conflict (496-498)
  - conflict (505)
  - conflict (514)
  - conflict (518)
  - conflict (528)
  - conflict (538)
  - conflict (542)
  - conflict (602)
  - conflict (614)
  - conflict (635)
Chain 'B':
Compound: vp1
Species: Feline calicivirus [TaxId:11978]
Database cross-references and differences (RAF-indexed):
- Uniprot A2T4P8
  - conflict (138)
  - conflict (147-148)
  - conflict (303)
  - conflict (318)
  - conflict (344)
  - conflict (354)
  - conflict (356)
  - conflict (362)
  - conflict (391)
  - conflict (401)
  - conflict (428)
  - conflict (439-441)
  - conflict (446)
  - conflict (448-451)
  - conflict (453)
  - conflict (455-456)
  - conflict (471)
  - conflict (492-494)
  - conflict (496-498)
  - conflict (505)
  - conflict (514)
  - conflict (518)
  - conflict (528)
  - conflict (538)
  - conflict (542)
  - conflict (602)
  - conflict (614)
  - conflict (635)
Chain 'C':
Compound: vp1
Species: Feline calicivirus [TaxId:11978]
Database cross-references and differences (RAF-indexed):
- Uniprot A2T4P8
  - conflict (132)
  - conflict (138)
  - conflict (147-148)
  - conflict (303)
  - conflict (318)
  - conflict (344)
  - conflict (354)
  - conflict (356)
  - conflict (362)
  - conflict (391)
  - conflict (401)
  - conflict (428)
  - conflict (439-441)
  - conflict (446)
  - conflict (448-451)
  - conflict (453)
  - conflict (455-456)
  - conflict (471)
  - conflict (492-494)
  - conflict (496-498)
  - conflict (505)
  - conflict (514)
  - conflict (518)
  - conflict (528)
  - conflict (538)
  - conflict (542)
  - conflict (602)
  - conflict (614)
  - conflict (635)
Heterogens: K

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>6gshA (A:)
mcstcanvlkyynwdphfrlvidpnkflsvgfcdnplmccypellpefgtvwdcdqsplq
iylesilgddewastyeaidpavppmhwdaagkifqphpgvlmhhligevakawdpnlpm
frleadgdgsitapeqgtpvggviaepsaqmsaaadmatgksvdseweaffsfhtsvnws
tsetqgkilfkqslgpllnpylehlaklyvawsgsidvrfsisgsgvfggklaaivvppg
vdpvqstsmlqyphvlfdarqvepvifsipdlrstlyhlmsdtdttslvimvyndlinpy
andsnssgcivtvetkpgadfkfhllkppgsmlthgsvpsdlipkssslwignrhwtdit
dfvirpfvfqanrhfdfnqetagwstpryrpititisekngaklgigvatdyivpgipdg
wpdttipekltpagdyaitnksgndittaagydgadvivnntnfkgmyicgslqrawgdk
kisntafittatkvdnaiepsnvidmtkiavyqdthvgkevqtsddtlsllgytgigeqa
igsdrdrvvrisvlpetgarggnhpifyknsiklgyvirsidvfnsqilhtsrqlslnhy
llppdsfavyriidsngswfdigidsdgfsfvgvssigklefpltasymgiqlakirlas
nirssmtkl

Sequence, based on observed residues (ATOM records):

>6gshA (A:)
sitapeqgtpvggviaepsaqmsaaadmatgksvdseweaffsfhtsvnwstsetqgkil
fkqslgpllnpylehlaklyvawsgsidvrfsisgsgvfggklaaivvppgvdpvqstsm
lqyphvlfdarqvepvifsipdlrstlyhlmsdtdttslvimvyndlinpyandsnssgc
ivtvetkpgadfkfhllkppgsmlthgsvpsdlipkssslwignrhwtditdfvirpfvf
qanrhfdfnqetagwstpryrpititisekngaklgigvatdyivpgipdgwpdttipek
ltpagdyaitnksgndittaagydgadvivnntnfkgmyicgslqrawgdkkisntafit
tatkvdnaiepsnvidmtkiavyqdthvgkevqtsddtlsllgytgigeqaigsdrdrvv
risvlpetgarggnhpifyknsiklgyvirsidvfnsqilhtsrqlslnhyllppdsfav
yriidsngswfdigidsdgfsfvgvssigklefpltasymgiqlakirlasni

Chain 'B':
Sequence, based on SEQRES records:

>6gshB (B:)
mcstcanvlkyynwdphfrlvidpnkflsvgfcdnplmccypellpefgtvwdcdqsplq
iylesilgddewastyeaidpavppmhwdaagkifqphpgvlmhhligevakawdpnlpm
frleadgdgsitapeqgtpvggviaepsaqmsaaadmatgksvdseweaffsfhtsvnws
tsetqgkilfkqslgpllnpylehlaklyvawsgsidvrfsisgsgvfggklaaivvppg
vdpvqstsmlqyphvlfdarqvepvifsipdlrstlyhlmsdtdttslvimvyndlinpy
andsnssgcivtvetkpgadfkfhllkppgsmlthgsvpsdlipkssslwignrhwtdit
dfvirpfvfqanrhfdfnqetagwstpryrpititisekngaklgigvatdyivpgipdg
wpdttipekltpagdyaitnksgndittaagydgadvivnntnfkgmyicgslqrawgdk
kisntafittatkvdnaiepsnvidmtkiavyqdthvgkevqtsddtlsllgytgigeqa
igsdrdrvvrisvlpetgarggnhpifyknsiklgyvirsidvfnsqilhtsrqlslnhy
llppdsfavyriidsngswfdigidsdgfsfvgvssigklefpltasymgiqlakirlas
nirssmtkl

Sequence, based on observed residues (ATOM records):

>6gshB (B:)
peqgtpvggviaepsaqmsaaadmatgksvdseweaffsfhtsvnwstsetqgkilfkqs
lgpllnpylehlaklyvawsgsidvrfsisgsgvfggklaaivvppgvdpvqstsmlqyp
hvlfdarqvepvifsipdlrstlyhlmsdtdttslvimvyndlinpyandsnssgcivtv
etkpgadfkfhllkppgsmlthgsvpsdlipkssslwignrhwtditdfvirpfvfqanr
hfdfnqetagwstpryrpititisekngaklgigvatdyivpgipdgwpdttipekltpa
gdyaitnksgndittaagydgadvivnntnfkgmyicgslqrawgdkkisntafittatk
vdnaiepsnvidmtkiavyqdthvgkevqtsddtlsllgytgigeqaigsdrdrvvrisv
lpetgarggnhpifyknsiklgyvirsidvfnsqilhtsrqlslnhyllppdsfavyrii
dsngswfdigidsdgfsfvgvssigklefpltasymgiqlakirlasnir

Chain 'C':
Sequence, based on SEQRES records:

>6gshC (C:)
mcstcanvlkyynwdphfrlvidpnkflsvgfcdnplmccypellpefgtvwdcdqsplq
iylesilgddewastyeaidpavppmhwdaagkifqphpgvlmhhligevakawdpnlpm
frleadgdgsitapeqgtpvggviaepsaqmsaaadmatgksvdseweaffsfhtsvnws
tsetqgkilfkqslgpllnpylehlaklyvawsgsidvrfsisgsgvfggklaaivvppg
vdpvqstsmlqyphvlfdarqvepvifsipdlrstlyhlmsdtdttslvimvyndlinpy
andsnssgcivtvetkpgadfkfhllkppgsmlthgsvpsdlipkssslwignrhwtdit
dfvirpfvfqanrhfdfnqetagwstpryrpititisekngaklgigvatdyivpgipdg
wpdttipekltpagdyaitnksgndittaagydgadvivnntnfkgmyicgslqrawgdk
kisntafittatkvdnaiepsnvidmtkiavyqdthvgkevqtsddtlsllgytgigeqa
igsdrdrvvrisvlpetgarggnhpifyknsiklgyvirsidvfnsqilhtsrqlslnhy
llppdsfavyriidsngswfdigidsdgfsfvgvssigklefpltasymgiqlakirlas
nirssmtkl

Sequence, based on observed residues (ATOM records):

>6gshC (C:)
sitapeqgtpvggviaepsaqmsaaadmatgksvdseweaffsfhtsvnwstsetqgkil
fkqslgpllnpylehlaklyvawsgsidvrfsisgsgvfggklaaivvppgvdpvqstsm
lqyphvlfdarqvepvifsipdlrstlyhlmsdtdttslvimvyndlinpyandsnssgc
ivtvetkpgadfkfhllkppgsmlthgsvpsdlipkssslwignrhwtditdfvirpfvf
qanrhfdfnqetagwstpryrpititisekngaklgigvatdyivpgipdgwpdttipek
ltpagdyaitnksgndittaagydgadvivnntnfkgmyicgslqrawgdkkisntafit
tatkvdnaiepsnvidmtkiavyqdthvgkevqtsddtlsllgytgigeqaigsdrdrvv
risvlpetgarggnhpifyknsiklgyvirsidvfnsqilhtsrqlslnhyllppdsfav
yriidsngswfdigidsdgfsfvgvssigklefpltasymgiqlakirlasnir