PDB entry 6gsa

View 6gsa on RCSB PDB site
Description: core centromere binding factor 3 (cbf3) with monomeric ndc10
Deposited on 2018-06-13, released 2018-08-01
The last revision was dated 2018-08-01, with a file datestamp of 2018-07-27.
Experiment type: EM
Resolution: 4.2 Å
R-factor: N/A
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Centromere DNA-binding protein complex CBF3 subunit B
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: CEP3, CBF3, CBF3B, CSL1, YMR168C, YM8520.17C
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Centromere DNA-binding protein complex CBF3 subunit B
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: CEP3, CBF3, CBF3B, CSL1, YMR168C, YM8520.17C
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Suppressor of kinetochore protein 1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SKP1, CBF3D, YDR328C, D9798.14
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Centromere DNA-binding protein complex CBF3 subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: CTF13, CBF3C, YMR094W, YM6543.01, YM9582.19
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35203 (Start-478)
      • expression tag (479-482)
  • Chain 'E':
    Compound: centromere DNA-binding protein complex cbf3 subunit a
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: CBF2, CBF3A, CEP2, CTF14, NDC10, YGR140W
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gsaA (A:)
mggsshhhhhhssglvprgshmklitassskeylpdlllfwqnyeywitniglyktkqrd
ltrtpanldtdteecmfwmnylqkdqsfqlmnfamenlgalyfgsigdiselylrveqyw
drradknhsvdgkywdaliwsvftmciyympveklaeifsvyplheylgsnkrlnwedgm
qlvmcqnfarcslfqlkqcdfmahpdirlvqaylilatttfpydepllanslltqcihtf
knfhvddfrpllnddpvesiakvtlgrifyrlcgcdylqsgprkpialhtevssllqhaa
ylqdlpnvdvyreenstevlywkiisldrdldqylnksskpplktldairreldifqykv
dsleedfrsnnsrfqkfialfqistvswklfkmyliyydtadsllkvihyskviislivn
nfhakseffnrhpmvmqtitrvvsfisfyqifvesaavkqllvdlteltanlptifgskl
dklvylterlsklkllwdkvqlldsgdsfyhpvfkilqndikiielkndemfslikglgs
lvplnklrqeslleeedenntepsdfrtiveefqseynisdils

    Sequence, based on observed residues (ATOM records):
    >6gsaA (A:)
skeylpdlllfwqnyeywitniglyktkqrdltrtpanldtdteecmfwmnylqkdqsfq
lmnfamenlgalyfgsigdiselylrveqywdrradknhsvdgkywdaliwsvftmciyy
mpveklaeifsvyplheylgsnkrlnwedgmqlvmcqnfarcslfqlkqcdfmahpdirl
vqaylilatttfpydepllanslltqcihtfknfhvddfrpllnddpvesiakvtlgrif
yrlcgcdylqsgprkpialhtevssllpnvdvyreenstevlywkiisldrdldqylnks
skpplktldairreldifqykvdsleedfrsnnsrfqkfialfqistvswklfkmyliyy
dtadsllkvihyskviislivnnfhakseffnrhpmvmqtitrvvsfisfyqifvesaav
kqllvdlteltanlptifgskldklvylterlsklkllwdkvqlldsgdsfyhpvfkilq
ndikiielkndemfslikglgslsdfrtiveefqseynisdils

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gsaB (B:)
mggsshhhhhhssglvprgshmklitassskeylpdlllfwqnyeywitniglyktkqrd
ltrtpanldtdteecmfwmnylqkdqsfqlmnfamenlgalyfgsigdiselylrveqyw
drradknhsvdgkywdaliwsvftmciyympveklaeifsvyplheylgsnkrlnwedgm
qlvmcqnfarcslfqlkqcdfmahpdirlvqaylilatttfpydepllanslltqcihtf
knfhvddfrpllnddpvesiakvtlgrifyrlcgcdylqsgprkpialhtevssllqhaa
ylqdlpnvdvyreenstevlywkiisldrdldqylnksskpplktldairreldifqykv
dsleedfrsnnsrfqkfialfqistvswklfkmyliyydtadsllkvihyskviislivn
nfhakseffnrhpmvmqtitrvvsfisfyqifvesaavkqllvdlteltanlptifgskl
dklvylterlsklkllwdkvqlldsgdsfyhpvfkilqndikiielkndemfslikglgs
lvplnklrqeslleeedenntepsdfrtiveefqseynisdils

    Sequence, based on observed residues (ATOM records):
    >6gsaB (B:)
skeylpdlllfwqnyeywitniglyktkqrdltrtpanldtdteecmfwmnylqkdqsfq
lmnfamenlgalyfgsigdiselylrveqywdrradknhsvdgkywdaliwsvftmciyy
mpveklaeifsvyplheylgsnkrlnwedgmqlvmcqnfarcslfqlkqcdfmahpdirl
vqaylilatttfpydepllanslltqcihtfknfhvddfrpllnddpvesiakvtlgrif
yrlcgcdylqsgprkpialhtevsnstevlywkiisldrdldqylnksskpplktldair
reldifqykvdsleedfrsnnsrfqkfialfqistvswklfkmyliyydtadsllkvihy
skviislivnnfhakseffnrhpmvmqtitrvvsfisfyqifvesaavkqllvdltelta
nlptifgskldklvylterlsklkllwdkvqlldsgdsfyhpvfkilqndikiielknde
mfslikglgslsdfrtiveefqseynisdils

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gsaC (C:)
mgvtsnvvlvsgegerftvdkkiaerslllknylndmhdsnlqnnsdsesdsdsetnhks
kdnnngddddedddeivmpvpnvrssvlqkviewaehhrdsnfpdeddddsrksapvdsw
dreflkvdqemlyeiilaanylnikplldagckvvaemirgrspeeirrtfnivndftpe
eeaairrenewaedrgs

    Sequence, based on observed residues (ATOM records):
    >6gsaC (C:)
snvvlvsgegerftvdkkiaerslllknylndmhdivmpvpnvrssvlqkviewaehhrd
snfpdeddddsrksapvdswdreflkvdqemlyeiilaanylnikplldagckvvaemir
grspeeirrtfnivndftpeeeaairrene

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6gsaD (D:)
mgpsfnpvrflelpidirkevyfhldgnfcgahpypidilyksndvelpgkpsykrskrs
kkllrymypvfatylnifeyspqliekwleyafwlrydclvldcfkvnhlydgtlidale
wtyldnelrlayfnkasmlevwytfkeykkwvidsvafdeldllnvsniqfnidnltpql
vdkclsileqkdlfatigevqfgqdeevgeekdvdvsgansdensspsstiknkkrsask
rshsdngnvgathnqltsisvirtirsmesmkslrkitvrgeklyellinfhgfrdnpgk
tisyivkrrineirlsrmnqisrtgladftrwdnlqklvlsrvayidlnsivfpknfksl
tmkrvskikwwnieenilkelkvdkrtfkslyikeddskftkffnlrhtrikeldksein
qitylrcqaivwlsfrtlnhiklqnvsevfnniivpralfdskrveiyrcekisqvlvig
srsgsenlyfqgskrrwkknfiavsaanrfkkisssgal

    Sequence, based on observed residues (ATOM records):
    >6gsaD (D:)
fnpvrflelpidirkevyfhldgnfcgleyafwlrydclvldcfkvnhlydgtlidalew
tyldnelrlayfnkasmlevwytfkeykkwvidsvanvsniqfnidnltpqlvdkclsil
eqkdlfatigevqfgsisvirtirsmesmkslrkitvrgeklyellinfhgfrdnpgkti
syivkrrineirlsrmnqisrtgladftrwdnlqklvlsrvayidlnsivfpknfksltm
krvskikwwnieenilkelkvdkrtfkslyikeddskftkffnlrhtrikeldkseinqi
tylrcqaivwlsfrtlnhiklqnvsevfnniivpralfdskrveiyrcekisqvlvigsr
s

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6gsaE (E:)
mgrssilfllklmkimdvqqqqeamssedrfqelvdslkprtahqyktyytkyiqwcqln
qiiptpednsvnsvpykdlpisaelihwflldtlitddkpgekreetedldeeeensfki
atlkkiigslnflsklckvhenpnanidtkylesvtklhthwidsqkaittnetnntntq
vlcppllkvslnlwnpetnhlsekffktcseklrflvdfqlrsylnlsfeerskirfgsl
klgkrdrdaiiyhkvthsaekkdtpghhqllallpqdcpficpqttlaaylylrfygips
vskgdgfpnlnadengsllqdipilrgkslttypreetfsnyyttvfrychlpykrreyf
nkcnlvyptwdedtfrtffneenhgnwleqpeafafpdkipfdfkkimnfkspytsystn
akkdpfpppkdllvqifpeideykrhdyeglsqnsrdfldlmevlrerflsnlpwiykff
pnhdifqdpifgnsdfqsyfndktihskgspilsfdilpgfnkiyknktnfysllierps
qltfasshnpdthpwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6gsaE (E:)
qyktyytkyiqwcqlnqiiptpsvpykdlpisaelihwflldtlitddedldeeeensfk
iatlkkiigslnflsklckvhenpnanidtkylesvtklhthwidsqkaicppllkvsln
lwnpetnhlsekffktcseklrflvdfqlrsylnlsfeerskirfgslklgkrdrdaiiy
hkvthspghhqllallpqdcpficpqttlaaylylrfygipsvskgdgfpnlnadengsl
lqdipilrgkslttypreetfsnyyttvfrychlpykrreyfnkcnlvyptwdedtfrtf
fneenhgnwleqpeafafpdkipfdfkkimnfkspytdpfpppkdllvqifpeideykrh
dyeglsqnsrdfldlmevlrerflsnlpwiykffpnhdifqdpifgnsdfqsyfndktih
skgspilsfdilpgfnkiyknktnfysllier