PDB entry 6gs4

View 6gs4 on RCSB PDB site
Description: Crystal structure of peptide transporter DtpA-nanobody in complex with valganciclovir
Class: membrane protein
Keywords: peptide transporter, membrane protein, complex with nanobody, SLC15 family member
Deposited on 2018-06-13, released 2019-01-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-13, with a file datestamp of 2019-11-08.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dipeptide and tripeptide permease A
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: dtpA, tppB, ydgR, b1634, JW1626
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6gs4a_
  • Chain 'H':
    Compound: Nanobody
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GS4 (0-End)
    Domains in SCOPe 2.08: d6gs4h1, d6gs4h2
  • Heterogens: F9E, LMT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6gs4A (A:)
gstanqkptesvslnafkqpkafylifsielwerfgyyglqgimavylvkqlgmseadsi
tlfssfsalvyglvaiggwlgdkvlgtkrvimlgaivlaigyalvawsghdagivymgma
aiavgnglfkanpssllstcyekndprldgaftmyymsvnigsffsmiatpwlaakygws
vafalsvvgllitivnfafcqrwvkqygskpdfepinyrnllltiigvvaliaiatwllh
nqevarmalgvvafgivvifgkeafamkgaarrkmivafilmleaiiffvlysqmptsln
ffairnvehsilglavepeqyqalnpfwiiigspilaaiynkmgdtlpmptkfaigmvmc
sgaflilplgakfasdagivsvswlvasyglqsigelmisglglamvaqlvpqrlmgfim
gswflttaganliggyvagmmavpdnvtdplmslevygrvflqigvataviavlmlltap
klhrmtqddaadkaakaavasthhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6gs4A (A:)
fkqpkafylifsielwerfgyyglqgimavylvkqlgmseadsitlfssfsalvyglvai
ggwlgdkvlgtkrvimlgaivlaigyalvawsghdagivymgmaaiavgnglfkanpssl
lstcyedprldgaftmyymsvnigsffsmiatpwlaakygwsvafalsvvgllitivnfa
fcqrwvkqygskpdfepinyrnllltiigvvaliaiatwllhnqevarmalgvvafgivv
ifgkeafamkgaarrkmivafilmleaiiffvlysqmptslnffairnvehsilglavep
eqyqalnpfwiiigspilaaiyngdtlpmptkfaigmvmcsgaflilplgakfasdagiv
svswlvasyglqsigelmisglglamvaqlvpqrlmgfimgswflttaganliggyvagm
mavpdnvtdplmslevygrvflqigvataviavlmlltapklhrmtqd

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6gs4H (H:)
qvqlqesggglvqaggslrlscagsgrtfssynmgwfrqapgkerefvggiswtgrsady
pdsvkgrftisrdnaknavylqmnslkpedtavyycaakqygsradypwddydywgqgtq
vtvssgaaepea

    Sequence, based on observed residues (ATOM records): (download) 
    >6gs4H (H:)
qvqlqesggglvqaggslrlscagsgrtfssynmgwfrqapgkerefvggiswtgrsady
pdsvkgrftisrdnaknavylqmnslkpedtavyycaakqygsradypwddydywgqgtq
vtvss