PDB entry 6gs1

View 6gs1 on RCSB PDB site
Description: crystal structure of peptide transporter dtpa-nanobody in mes buffer
Deposited on 2018-06-13, released 2019-01-30
The last revision was dated 2019-02-20, with a file datestamp of 2019-02-15.
Experiment type: XRAY
Resolution: 3.29 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dipeptide and tripeptide permease A
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: dtpA, tppB, ydgR, b1634, JW1626
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Nanobody 00
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GS1 (0-End)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gs1A (A:)
gstanqkptesvslnafkqpkafylifsielwerfgyyglqgimavylvkqlgmseadsi
tlfssfsalvyglvaiggwlgdkvlgtkrvimlgaivlaigyalvawsghdagivymgma
aiavgnglfkanpssllstcyekndprldgaftmyymsvnigsffsmiatpwlaakygws
vafalsvvgllitivnfafcqrwvkqygskpdfepinyrnllltiigvvaliaiatwllh
nqevarmalgvvafgivvifgkeafamkgaarrkmivafilmleaiiffvlysqmptsln
ffairnvehsilglavepeqyqalnpfwiiigspilaaiynkmgdtlpmptkfaigmvmc
sgaflilplgakfasdagivsvswlvasyglqsigelmisglglamvaqlvpqrlmgfim
gswflttaganliggyvagmmavpdnvtdplmslevygrvflqigvataviavlmlltap
klhrmtqddaadkaakaavasthhhhhh

    Sequence, based on observed residues (ATOM records):
    >6gs1A (A:)
fkqpkafylifsielwerfgyyglqgimavylvkqlgmseadsitlfssfsalvyglvai
ggwlgdkvlgtkrvimlgaivlaigyalvawsghdagivymgmaaiavgnglfkanpssl
lstcyekndprldgaftmyymsvnigsffsmiatpwlaakygwsvafalsvvgllitivn
fafcqrwvkqygskpdfepinyrnllltiigvvaliaiatwllhnqevarmalgvvafgi
vvifgkeafamkgaarrkmivafilmleaiiffvlysqmptslnffairnvehsilglav
epeqyqalnpfwiiigspilaaiynkmgdtlpmptkfaigmvmcsgaflilplgakfasd
agivsvswlvasyglqsigelmisglglamvaqlvpqrlmgfimgswflttaganliggy
vagmmavpdnvtdplmslevygrvflqigvataviavlmlltapklhrmtqd

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6gs1H (H:)
qvqlqesggglvqaggslrlscagsgrtfssynmgwfrqapgkerefvggiswtgrsady
pdsvkgrftisrdnaknavylqmnslkpedtavyycaakqygsradypwddydywgqgtq
vtvssgaaepea

    Sequence, based on observed residues (ATOM records):
    >6gs1H (H:)
qvqlqesggglvqaggslrlscagsgrtfssynmgwfrqapgkerefvggiswtgrsady
pdsvkgrftisrdnaknavylqmnslkpedtavyycaakqygsradypwddydywgqgtq
vtvss