PDB entry 6gqz

View 6gqz on RCSB PDB site
Description: Petrobactin-binding engineered lipocalin without ligand
Class: transport protein
Keywords: anticalin, beta-barrel, petrobactin, lcn2, lipocalin, ngal, protein engineering, transport protein
Deposited on 2018-06-08, released 2018-08-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-10-31, with a file datestamp of 2018-10-26.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: N/A
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Neutrophil gelatinase-associated lipocalin
  Species: Homo sapiens [TaxId:9606]
  Gene: LCN2, HNL, NGAL
  Database cross-references and differences (RAF-indexed):
  • Uniprot P80188 (0-173)
    • engineered mutation (23)
    • engineered mutation (31)
    • engineered mutation (33)
    • engineered mutation (35-37)
    • engineered mutation (44)
    • engineered mutation (47)
    • engineered mutation (63)
    • engineered mutation (65-69)
    • engineered mutation (72)
    • engineered mutation (74)
    • engineered mutation (76)
    • engineered mutation (82)
    • engineered mutation (91)
    • engineered mutation (95)
    • engineered mutation (98)
    • engineered mutation (120)
    • engineered mutation (122)
    • engineered mutation (127)
    • engineered mutation (129)
  Domains in SCOPe 2.08: d6gqza_
• Chain 'B':
  Compound: Neutrophil gelatinase-associated lipocalin
  Species: Homo sapiens [TaxId:9606]
  Gene: LCN2, HNL, NGAL
  Database cross-references and differences (RAF-indexed):
  • Uniprot P80188 (0-173)
    • engineered mutation (23)
    • engineered mutation (31)
    • engineered mutation (33)
    • engineered mutation (35-37)
    • engineered mutation (44)
    • engineered mutation (47)
    • engineered mutation (63)
    • engineered mutation (65-69)
    • engineered mutation (72)
    • engineered mutation (74)
    • engineered mutation (76)
    • engineered mutation (82)
    • engineered mutation (91)
    • engineered mutation (95)
    • engineered mutation (98)
    • engineered mutation (120)
    • engineered mutation (122)
    • engineered mutation (127)
    • engineered mutation (129)
  Domains in SCOPe 2.08: d6gqzb_
• Heterogens: HOH

PDB Chain Sequences:

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6gqzA (A:)
  sdlipapplskvplqqnfqdnqfhgkwyvvgfaeniqqredkdppkmiatiyelkedksy
  nvtnvasnwekctyriktfvpgsqpgeftlgeiksrpgmtsylvrvvstnynqhamvffk
  tvvqnrekfwitlygrtkeltselkenfirfskslglpenhivfpvpidqcidg
  

  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6gqzB (B:)
  sdlipapplskvplqqnfqdnqfhgkwyvvgfaeniqqredkdppkmiatiyelkedksy
  nvtnvasnwekctyriktfvpgsqpgeftlgeiksrpgmtsylvrvvstnynqhamvffk
  tvvqnrekfwitlygrtkeltselkenfirfskslglpenhivfpvpidqcidg