PDB entry 6gqz

View 6gqz on RCSB PDB site
Description: Petrobactin-binding engineered lipocalin without ligand
Class: transport protein
Keywords: anticalin, beta-barrel, petrobactin, lcn2, lipocalin, ngal, protein engineering, transport protein
Deposited on 2018-06-08, released 2018-08-15
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-08-15, with a file datestamp of 2018-08-10.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: N/A
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Neutrophil gelatinase-associated lipocalin
    Species: Homo sapiens [TaxId:9606]
    Gene: LCN2, HNL, NGAL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80188 (0-173)
      • engineered mutation (23)
      • engineered mutation (31)
      • engineered mutation (33)
      • engineered mutation (35-37)
      • engineered mutation (44)
      • engineered mutation (47)
      • engineered mutation (63)
      • engineered mutation (65-69)
      • engineered mutation (72)
      • engineered mutation (74)
      • engineered mutation (76)
      • engineered mutation (82)
      • engineered mutation (91)
      • engineered mutation (95)
      • engineered mutation (98)
      • engineered mutation (120)
      • engineered mutation (122)
      • engineered mutation (127)
      • engineered mutation (129)
    Domains in SCOPe 2.07: d6gqza_
  • Chain 'B':
    Compound: Neutrophil gelatinase-associated lipocalin
    Species: Homo sapiens [TaxId:9606]
    Gene: LCN2, HNL, NGAL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80188 (0-173)
      • engineered mutation (23)
      • engineered mutation (31)
      • engineered mutation (33)
      • engineered mutation (35-37)
      • engineered mutation (44)
      • engineered mutation (47)
      • engineered mutation (63)
      • engineered mutation (65-69)
      • engineered mutation (72)
      • engineered mutation (74)
      • engineered mutation (76)
      • engineered mutation (82)
      • engineered mutation (91)
      • engineered mutation (95)
      • engineered mutation (98)
      • engineered mutation (120)
      • engineered mutation (122)
      • engineered mutation (127)
      • engineered mutation (129)
    Domains in SCOPe 2.07: d6gqzb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6gqzA (A:)
    sdlipapplskvplqqnfqdnqfhgkwyvvgfaeniqqredkdppkmiatiyelkedksy
    nvtnvasnwekctyriktfvpgsqpgeftlgeiksrpgmtsylvrvvstnynqhamvffk
    tvvqnrekfwitlygrtkeltselkenfirfskslglpenhivfpvpidqcidg
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6gqzB (B:)
    sdlipapplskvplqqnfqdnqfhgkwyvvgfaeniqqredkdppkmiatiyelkedksy
    nvtnvasnwekctyriktfvpgsqpgeftlgeiksrpgmtsylvrvvstnynqhamvffk
    tvvqnrekfwitlygrtkeltselkenfirfskslglpenhivfpvpidqcidg