PDB entry 6gpg

View 6gpg on RCSB PDB site
Description: structure of the rig-i singleton-merten syndrome variant c268f
Deposited on 2018-06-05, released 2018-08-08
The last revision was dated 2018-08-08, with a file datestamp of 2018-08-03.
Experiment type: XRAY
Resolution: 2.89 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable ATP-dependent RNA helicase DDX58
    Species: Homo sapiens [TaxId:9606]
    Gene: DDX58
    Database cross-references and differences (RAF-indexed):
    • Uniprot O95786
      • engineered mutation (56)
  • Chain 'B':
    Compound: RNA (5'-r(*cp*gp*ap*cp*gp*cp*up*ap*gp*cp*gp*up*cp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: RNA (5'-r(*cp*gp*ap*cp*gp*cp*up*ap*gp*cp*gp*up*cp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: ZN, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gpgA (A:)
mhhhhhhssglevlfqgphmvsdtnlyspfkprnyqlelalpamkgkntiicaptgfgkt
fvsllicehhlkkfpqgqkgkvvffanqipvyeqqksvfskyferhgyrvtgisgataen
vpveqivenndiiiltpqilvnnlkkgtipslsiftlmifdechntskqhpynmimfnyl
dqklggssgplpqvigltasvgvgdakntdealdyicklcasldasviatvkhnleeleq
vvykpqkffrkvesrisdkfkyiiaqlmrdteslakrickdlenlsqiqnrefgtqkyeq
wivtvqkacmvfqmpdkdeesrickalflytshlrkyndaliiseharmkdaldylkdff
snvraagfdeieqdltqrfeeklqelesvsrdpsnenpkledlcfilqeeyhlnpetiti
lfvktralvdalknwiegnpklsflkpgiltgrgktnqntgmtlpaqkcildafkasgdh
niliatsvadegidiaqcnlvilyeyvgnvikmiqtrgrgrargskcflltsnagvieke
qinmykekmmndsilrlqtwdeavfrekilhiqthekfirdsqekpkpvpdkenkkllcr
kckalacytadvrvieechytvlgdafkecfvsrphpkpkqfssfekrakifcarqncsh
dwgihvkyktfeipvikiesfvvediatgvqtlyskwkdfhfekipfdpaemsk

    Sequence, based on observed residues (ATOM records):
    >6gpgA (A:)
spfkprnyqlelalpamkgkntiicaptgfgktfvsllicehhlkkfpqgqkgkvvffan
qipvyeqqksvfskyferhgyrvtgisgataenvpveqivenndiiiltpqilvnnlkkg
tipslsiftlmifdechntskqhpynmimfnyldqklggssgplpqvigltasvgvgdak
ntdealdyicklcasldasviatvkhnleeleqvvykpqkffrkvesrisdkfkyiiaql
mrdteslakrickdlnrefgtqkyeqwivtvqkacmvfqmpdkdeesrickalflytshl
rkyndaliiseharmkdaldylkdffsnvraagfdeieqdltqrfeeklqelesvsrdps
nenpkledlcfilqeeyhlnpetitilfvktralvdalknwiegnpklsflkpgiltgdh
niliatsvadegidiaqcnlvilyeyvgnvikmiqtrgrgrargskcflltsnagvieke
qinmykekmmndsilrlqtwdeavfrekilhiqthekfirdsqekpkpvpdkenkkllcr
kckalacytadvrvieechytvlgdafkecfvsrphpkpkqfssfekrakifcarqncsh
dwgihvkyktfeipvikiesfvvediatgvqtlyskwkdfhfekipfdpae

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.