PDB entry 6gov

View 6gov on RCSB PDB site
Description: structure of the rna polymerase lambda-based antitermination complex
Deposited on 2018-06-04, released 2019-02-13
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3.7 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transcription termination/antitermination protein NusA
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: nusA, Z4530, ECs4050
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AFF8 (2-End)
      • conflict (359)
  • Chain 'B':
    Compound: Transcription antitermination protein NusB
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: nusB, Z0518, ECs0469
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 30S ribosomal protein S10
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: rpsJ, nusE, Z4692, ECs4186
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Transcription termination/antitermination protein NusG
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: nusG, Z5555, ECs4905
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AFG1 (Start-183)
      • conflict (39)
  • Chain 'K':
    Compound: DNA (I)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'L':
    Compound: DNA (II)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'N':
    Compound: Antitermination protein N
    Species: Escherichia phage lambda [TaxId:10710]
    Gene: N, lambdap49
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03045 (3-109)
      • expression tag (0-2)
  • Chain 'R':
    Compound: RNA (transcription bubble)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'U':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: rpoA, Z4665, ECs4160
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: rpoA, Z4665, ECs4160
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: DNA-directed RNA polymerase subunit omega
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: rpoZ, Z5075, ECs4524
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: DNA-directed RNA polymerase subunit beta
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: rpoB, Z5560, ECs4910
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: DNA-directed RNA polymerase subunit beta'
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: rpoC, Z5561, ECs4911
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6govA (A:)
    gamnkeilavveavsnekalprekifealesalatatkkkyeqeidvrvqidrksgdfdt
    frrwlvvdevtqptkeitleaaryedeslnlgdyvedqiesvtfdrittqtakqvivqkv
    reaeramvvdqfrehegeiitgvvkkvnrdnisldlgnnaeavilredmlprenfrpgdr
    vrgvlysvrpeargaqlfvtrskpemlielfrievpeigeevieikaaardpgsrakiav
    ktndkridpvgacvgmrgarvqavstelggeridivlwddnpaqfvinamapadvasivv
    dedkhtmdiaveagnlaqaigrngqnvrlasqlsgwelnvmtvddlqakhqaeahaaida
    ftkyldidedfatvlveegfstleelayvpmkelleiegldeptvealreraknalatia
    qaqeeslgdnkpaddllnlegvdrdlafklaargvctledlaeqgiddladiegltdeka
    galimaarnicwfgdea
    

    Sequence, based on observed residues (ATOM records):
    >6govA (A:)
    mnkeilavveavsnekalprekifealesalatatkkkyeqeidvrvqidrksgdfdtfr
    rwlvvdevtqptkeitleaaryedeslnlgdyvedqiesvtfdrittqtakqvivqkvre
    aeramvvdqfrehegeiitgvvkkvnrdnisldlgnnaeavilredmlprenfrpgdrvr
    gvlysvrpeargaqlfvtrskpemlielfrievpeigeevieikaaardpgsrakiavkt
    ndkridpvgacvgmrgarvqavstelggeridivlwddnpaqfvinamapadvasivvde
    dkhtmdiaveagnlaqaigrngqnvrlasqlsgwelnvmtvddlqakhqaeahaaidaft
    kyldidedfatvlveegfstleelayvpmkelleiegldeptvealreraknalatiaqa
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6govB (B:)
    gamkpaarrrarecavqalyswqlsqndiadveyqflaeqdvkdvdvlyfrellagvatn
    tayldglmkpylsrlleelgqvekavlrialyelskrsdvpykvaineaielaksfgaed
    shkfvngvldkaapvirpnkk
    

    Sequence, based on observed residues (ATOM records):
    >6govB (B:)
    mkpaarrrarecavqalyswqlsqndiadveyqflaeqdvkdvdvlyfrellagvatnta
    yldglmkpylsrlleelgqvekavlrialyelskrsdvpykvaineaielaksfgaedsh
    kfvngvldkaapvirpnkk
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6govE (E:)
    lgsmqnqririrlkafdhrlidqataeivetakrtgaqvrgpiplptrkerftvlisphv
    nkdardqyeirthlrlvdiveptektvdalmrldlaagvdvqislg
    

    Sequence, based on observed residues (ATOM records):
    >6govE (E:)
    qnqririrlkafdhrlidqataeivetakrtgaqvrgpiplptrkerftvlisphvndqy
    eirthlrlvdiveptektvdalmrldlaagvdvqis
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6govG (G:)
    lgsmseapkkrwyvvqafsgfegrvatslrehiklhnmeelfgevmvpteevveirggqr
    rkserkffpgyvlvqmvmndaswhlvrsvprvmgfiggtsdrpapisdkevdaimnrlqq
    vgdkprpktlfepgemvrvndgpfadfngvveevdyeksrlkvsvsifgratpveldfsq
    veka
    

    Sequence, based on observed residues (ATOM records):
    >6govG (G:)
    apkkrwyvvqafsgfegrvatslrehiklhnmeelfgevmvpteevvrrkserkffpgyv
    lvqmvmndaswhlvrsvprvmgfiggtsdrpapisdkevdaimnrlqqvgdkprpktlfe
    pgemvrvndgpfadfngvveevdyeksrlkvsvsifgratpveldfsqveka
    

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >6govN (N:)
    lgsmdaqtrrrerraekqaqwkaanpllvgvsakpvnrpilslnrkpksrvesalnpidl
    tvlaeyhkqiesnlqrierknqrtwyskpgergitcsgrqkikgksipli
    

  • Chain 'R':
    No sequence available.

  • Chain 'U':
    Sequence, based on SEQRES records:
    >6govU (U:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
    evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
    teikdvlasrglslgmrlenwppasiade
    

    Sequence, based on observed residues (ATOM records):
    >6govU (U:)
    teflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgvl
    heystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivk
    pqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspveriay
    nveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlr
    

  • Chain 'V':
    Sequence, based on SEQRES records:
    >6govV (V:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
    evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
    teikdvlasrglslgmrlenwppasiade
    

    Sequence, based on observed residues (ATOM records):
    >6govV (V:)
    svteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidg
    vlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdvei
    vkpqhvichltdenasismrikvqrgrgyvpastrrllvdacyspveriaynveaarveq
    rtdldklviemetngtidpeeairraatilaeqleafvdl
    

  • Chain 'W':
    Sequence, based on SEQRES records:
    >6govW (W:)
    marvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglin
    nqildvrerqeqqeqeaaelqavtaiaegrr
    

    Sequence, based on observed residues (ATOM records):
    >6govW (W:)
    arvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglinn
    qildvrerqeqqeqeaaelqavtaiaegrr
    

  • Chain 'X':
    Sequence, based on SEQRES records:
    >6govX (X:)
    mvysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiq
    sysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeq
    evymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyr
    gswldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqme
    lvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakd
    yidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrl
    salveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgil
    skddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerls
    lgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltr
    eragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvt
    deihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqv
    vsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakr
    ggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepverg
    dvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvs
    rdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeek
    llraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdl
    seelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqyde
    lkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskin
    piedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevak
    lrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellk
    lgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplg
    gkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmp
    esfnvllkeirslginielede
    

    Sequence, based on observed residues (ATOM records):
    >6govX (X:)
    mvysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiq
    sysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeq
    evymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyr
    gswldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqme
    lvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakd
    yidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrl
    salveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgil
    skddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerls
    lgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltr
    eragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvt
    deihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqv
    vsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakr
    ggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepverg
    dvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvs
    rdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeek
    llraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdl
    seelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqyde
    lkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskin
    piedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevak
    lrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellk
    lgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplg
    gkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmp
    esfnvllkeirslginieled
    

  • Chain 'Y':
    Sequence, based on SEQRES records:
    >6govY (Y:)
    vkdllkflkaqtkteefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcar
    ifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflksl
    psrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakm
    gaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmilt
    vlpvlppdlrplvpldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlq
    eavdalldngrrgraitgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpy
    lrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehp
    vllnraptlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlea
    ralmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsg
    laslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkka
    iskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeae
    vaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfn
    siymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgar
    kgladtalktansgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvl
    grvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcyg
    rdlarghiinkgeaigviaaqsigepgtqltmrtfhiggaasraaaessiqvknkgsikl
    snvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanw
    dphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalki
    vdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqesggtkditgglpr
    vadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfe
    gervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqm
    lrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfi
    saasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraageapa
    apqvtaedasaslaellnaglggsdnehhhhhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6govY (Y:)
    teefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcg
    kykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflkslpsrigllldmplr
    diervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmd
    leqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplv
    pldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrg
    raitgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpylrlhqcglpkkma
    lelfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnraptlhrlg
    iqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilsp
    angepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvrit
    eyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilg
    lkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglv
    tagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargs
    aaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalktans
    gyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgt
    adilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkge
    aigviaaqsigepgtqltmssiqvknkgsiklsnvksvvnssgklvitsrntelklidef
    grtkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtitr
    qtdeltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaivq
    ledgvqissgdtlaripqtgglprvadlfearrpkepailaeisgivsfgketkgkrrlv
    itpvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivne
    vqdvyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkianreleang
    kvgatysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrl
    ipagtgyayhqdrmrrraa