PDB entry 6go5

View 6go5 on RCSB PDB site
Description: tdt chimera (loop1 of pol mu) - ternary complex with 1-nt gapped dna substrate
Deposited on 2018-06-01, released 2019-06-05
The last revision was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA nucleotidylexotransferase,DNA-directed DNA/RNA polymerase mu,DNA nucleotidylexotransferase
    Species: Mus musculus [TaxId:10090]
    Gene: DNTT, TDT
    Database cross-references and differences (RAF-indexed):
    • Uniprot P09838 (Start-266)
    • Uniprot Q9JIW4 (267-296)
      • conflict (290)
    • Uniprot P09838 (297-400)
  • Chain 'B':
    Compound: DNA nucleotidylexotransferase,DNA-directed DNA/RNA polymerase mu,DNA nucleotidylexotransferase
    Species: Mus musculus [TaxId:10090]
    Gene: DNTT, TDT
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: DNA (5'-d(*tp*gp*tp*tp*tp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'G':
    Compound: DNA (5'-d(*ap*cp*ap*gp*cp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'H':
    Compound: DNA (5'-d(*cp*gp*cp*tp*gp*gp*cp*ap*ap*ap*cp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'L':
    Compound: DNA (5'-d(*tp*gp*tp*tp*tp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'M':
    Compound: DNA (5'-d(*ap*cp*ap*gp*cp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'N':
    Compound: DNA (5'-d(*cp*gp*cp*tp*gp*gp*cp*ap*ap*ap*cp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: NA, MG, XC5, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6go5A (A:)
mgsshhhhhhssglvprgshmspspvpgsqnvpapavkkisqyacqrrttlnnynqlftd
aldilaendelrenegsclafmrassvlkslpfpitsmkdtegipclgdkvksiiegiie
dgesseakavlnderyksfklftsvfgvglktaekwfrmgfrtlskiqsdkslrftqmqk
agflyyedlvscvnrpeaeavsmlvkeavvtflpdalvtmtggfrrgkmtghdvdflits
peatedeeqqllhkvtdfwkqqglllyhqyhrshladsahnlrqrsstmdvfersfcilk
ldhgrvhseksgqqegkgwkairvdlvmcpydrrafallgwtgsrqferdlrryatherk
mmldnhalydrtkrvfleaeseeeifahlgldyiepwerna

    Sequence, based on observed residues (ATOM records):
    >6go5A (A:)
kisqyacqrrttlnnynqlftdaldilaendelrenegsclafmrassvlkslpfpitsm
kdtegipclgdkvksiiegiiedgesseakavlnderyksfklftsvfgvglktaekwfr
mgfrtlskiqsdkslrftqmqkagflyyedlvscvnrpeaeavsmlvkeavvtflpdalv
tmtggfrrgkmtghdvdflitspeaeeqqllhkvtdfwkqqglllyhqyhrshsstmdvf
ersfcilkldhgrvhqegkgwkairvdlvmcpydrrafallgwtgsrqferdlrryathe
rkmmldnhalydrtkrvfleaeseeeifahlgldyiepwerna

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6go5B (B:)
mgsshhhhhhssglvprgshmspspvpgsqnvpapavkkisqyacqrrttlnnynqlftd
aldilaendelrenegsclafmrassvlkslpfpitsmkdtegipclgdkvksiiegiie
dgesseakavlnderyksfklftsvfgvglktaekwfrmgfrtlskiqsdkslrftqmqk
agflyyedlvscvnrpeaeavsmlvkeavvtflpdalvtmtggfrrgkmtghdvdflits
peatedeeqqllhkvtdfwkqqglllyhqyhrshladsahnlrqrsstmdvfersfcilk
ldhgrvhseksgqqegkgwkairvdlvmcpydrrafallgwtgsrqferdlrryatherk
mmldnhalydrtkrvfleaeseeeifahlgldyiepwerna

    Sequence, based on observed residues (ATOM records):
    >6go5B (B:)
kisqyacqrrttlnnynqlftdaldilaendelrenegsclafmrassvlkslpfpitsm
kdtegipclgdkvksiiegiiedgesseakavlnderyksfklftsvfgvglktaekwfr
mgfrtlskiqsdkslrftqmqkagflyyedlvscvnrpeaeavsmlvkeavvtflpdalv
tmtggfrrgkmtghdvdflitsptedeeqqllhkvtdfwkqqglllyhqyhrsfersfci
lkldhgrvhgkgwkairvdlvmcpydrrafallgwtgsrqferdlrryatherkmmldnh
alydrtkrvfleaeseeeifahlgldyiepwerna

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.