PDB entry 6gni

View 6gni on RCSB PDB site
Description: cryo-tomography and subtomogram averaging of sar1-sec23-sec24 - fitted model.
Deposited on 2018-05-30, released 2018-10-17
The last revision was dated 2018-10-24, with a file datestamp of 2018-10-19.
Experiment type: EM
Resolution: 4.9 Å
R-factor: N/A
AEROSPACI score: 0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein transport protein SEC23
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SEC23, YPR181C, P9705.14
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Small COPII coat GTPase SAR1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SAR1, YPL218W
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: protein transport protein SEC24
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SEC24, ANU1, YIL109C
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN, GNP, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gniA (A:)
dfetnedingvrftwnvfpstrsdansnvvpvgclytplkeydelnvapynpvvcsgphc
ksilnpycvidprnsswscpicnsrnhlppqytnlsqenmplelqsttieyitnkpvtvp
pifffvvdltsetenldslkesiitslsllppnaliglitygnvvqlhdlssetidrcnv
frgdreyqlealtemltgqkptgpggaashlpnamnkvtpfslnrfflpleqvefklnql
lenlspdqwsvpaghrplratgsalniaslllqgcyknipariilfasgpgtvapglivn
selkdplrshhdidsdhaqhykkackfynqiaqrvaanghtvdifagcydqigmsemkql
tdstggvllltdafstaifkqsylrlfakdeegylkmafngnmavktskdlkvqgligha
savkktdanniseseigigatstwkmaslspyhsyaiffeiantaansnpmmsapgsadr
phlaytqfittyqhssgtnrirvttvanqllpfgtpaiaasfdqeaaavlmariavhkae
tddgadvirwldrtliklcqkyadynkddpqsfrlapnfslypqftyylrrsqflsvfnn
spdetafyrhiftredttnslimiqptltsfsmeddpqpvlldsisvkpntillldtfff
iliyhgeqiaqwrkagyqddpqyadfkalleepkleaaellvdrfplprfidteaggsqa
rfllsklnpsdnyqdmarggstivltddvslqnfmthlqqvavsgqa

    Sequence, based on observed residues (ATOM records):
    >6gniA (A:)
dfetnedingvrftwnvfpstrsdansnvvpvgclytplkeydelnvapynpvvcsgphc
ksilnpycvidprnsswscpicnsrnhlppqytnlsqenmplelqsttieyitnkpvtvp
pifffvvdltsetenldslkesiitslsllppnaliglitygnvvqlhdlssetidrcnv
frgdreyqlealtemltgqkvtpfslnrfflpleqvefklnqllenlspdqwsvpaghrp
lratgsalniaslllqgcyknipariilfasgpgtvapglivnselkdplrshhdidsdh
aqhykkackfynqiaqrvaanghtvdifagcydqigmsemkqltdstggvllltdafsta
ifkqsylrlfakdeegylkmafngnmavktskdlkvqglighasavkktdanniseseig
igatstwkmaslspyhsyaiffeianthlaytqfittyqhssgtnrirvttvanqllpfg
tpaiaasfdqeaaavlmariavhkaetddgadvirwldrtliklcqkyadynkddpqsfr
lapnfslypqftyylrrsqflsvfnnspdetafyrhiftredttnslimiqptltsfsme
ddpqpvlldsisvkpntillldtfffiliyhgeqiaqwrkagyqddpqyadfkalleepk
leaaellvdrfplprfidteaggsqarfllsklnpsdnyqdmarggstivltddvslqnf
mthlqqvavsgqa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gniB (B:)
hgkllflgldnagkttllhmlkndrlatlqptwhptseelaignikfttfdlgghiqarr
lwkdyfpevngivflvdaadperfdearveldalfniaelkdvpfvilgnkidapnavse
aelrsalgllnttgsqriegqrpvevfmcsvvmrngyleafqwlsqy

    Sequence, based on observed residues (ATOM records):
    >6gniB (B:)
hgkllflgldnagkttllhmlkndrlatlqptwhptseelaignikfttfdlgghiqarr
lwkdyfpevngivflvdaadperfdearveldalfniaelkdvpfvilgnkidapnavse
aelrsalgllnttgiegqrpvevfmcsvvmrngyleafqwlsqy

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6gniE (E:)
rpmnqlypidlltelpppitdltlpppplvippermlvpselsnaspdyirstlnavpkn
ssllkksklpfglvirpyqhlyddidppplnedglivrcrrcrsymnpfvtfieqgrrwr
cnfcrlandvpmqmdqsdpndpksrydrneikcavmeymapkeytlrqpppatycflidv
sqssiksgllattintllqnldsipnhdertrisilcvdnaihyfkipldsenneesadq
inmmdiadleepflprpnsmvvslkacrqnietlltkipqifqsnlitnfalgpalksay
hliggvggkiivvsgtlpnlgigklqrrnesgvvntsketaqllscqdsfyknftidcsk
vqitvdlflasedymdvaslsnlsrftagqthfypgfsgknpndivkfstefakhismdf
cmetvmrargstglrmsrfyghffnrssdlcafstmprdqsylfevnvdesimadycyvq
vavllslnnsqrririitlamptteslaevyasadqlaiasfynskavekalnsslddar
vlinksvqdilatykkeivvsntaggaplrlcanlrmfpllmhsltkhmafrsgivpsdh
rasalnnleslplkylikniypdvyslhdmadeaglpvqtedgeatgtivlpqpinatss
lferyglylidngnelflwmggdavpalvfdvfgtqdifdipigkqeipvvensefnqrv
rniinqlrnhddvityqslyivrgaslsepvnhasarevatlrlwasstlvedkilnnes
yreflqimkarisk

    Sequence, based on observed residues (ATOM records):
    >6gniE (E:)
rpmnqlypidlltelpppitdltlpppplvippermlvpselsnaspdyirstlnavpkn
ssllkksklpfglvirpyqhlyddidppplnedglivrcrrcrsymnpfvtfieqgrrwr
cnfcrlandvpmqmdqsdpndpksrydrneikcavmeymapkeytlrqpppatycflidv
sqssiksgllattintllqnldsipnhdertrisilcvdnaihyfkipldqinmmdiadl
eepflprpnsmvvslkacrqnietlltkipqifqsnlitnfalgpalksayhliggvggk
iivvsgtlpnlgigklqrrnentsketaqllscqdsfyknftidcskvqitvdlflased
ymdvaslsnlsrftagqthfypgfsgknpndivkfstefakhismdfcmetvmrargstg
lrmsrfyghffnrssdlcafstmprdqsylfevnvdesimadycyvqvavllslnnsqrr
iriitlamptteslaevyasadqlaiasfynskavekalnsslddarvlinksvqdilat
ykkeivvsntaggaplrlcanlrmfpllmhsltkhmafrsgivpsdhrasalnnleslpl
kylikniypdvyslhdmadeaglpgtivlpqpinatsslferyglylidngnelflwmgg
davpalvffnqrvrniinqlrnhddvityqslyivrarevatlrlwasstlvedkilnne
syreflqimkarisk