PDB entry 6gnf

View 6gnf on RCSB PDB site
Description: granule bound starch synthase from cyanobacterium sp. clg1 bound to acarbose and adp
Deposited on 2018-05-30, released 2018-07-25
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycogen synthase
    Species: Cyanobacterium sp. CLg1 [TaxId:197335]
    Gene: glgA
    Database cross-references and differences (RAF-indexed):
    • Uniprot V5SNJ5 (20-End)
      • expression tag (19)
  • Chain 'B':
    Compound: Glycogen synthase
    Species: Cyanobacterium sp. CLg1 [TaxId:197335]
    Gene: glgA
    Database cross-references and differences (RAF-indexed):
    • Uniprot V5SNJ5 (20-End)
      • expression tag (13-19)
  • Chain 'C':
    Compound: Glycogen synthase
    Species: Cyanobacterium sp. CLg1 [TaxId:197335]
    Gene: glgA
    Database cross-references and differences (RAF-indexed):
    • Uniprot V5SNJ5 (20-End)
      • expression tag (11-19)
  • Heterogens: ADP, SO4, GLC, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gnfA (A:)
mgsshhhhhhssglvprgshmlnicfvstevapysktgglgdvteglpeelakighkvct
vaprfdqyedawdteiiqpvnygqektnvryfhsykkgvdhiwvdhhvylsktplvnkkl
ygpkdsvdyidnverfamlsqaalavpllvplgakgsqgvmgentifvcndwhtsllply
lkeyyqsqgifvnaktvmllhniafqgrfpsskfdalnlpakylsdlsfntqfappplde
kttepitspepmymlnwlkagflncdqaltvspnfahevtsspmggveldavardvgltg
itngtkietwnpqkdkfilanynsrtinsgkklckvalqkecgltvdpdiplfgfigrle
nqkgadviiaampklkqlncqvvilgigspkleqelesvadkypfakgvarfdsklahfi
tagadyclmpsrfepcglnqlyammygtipvvapvgglvdtvppqfgflmnkipmpkipg
vtvseellqqgvdamivgmkkalqeygtpkfkkmrldcmandvswkkpaakyvdifeqlv
nsqv

    Sequence, based on observed residues (ATOM records):
    >6gnfA (A:)
hmlnicfvstevapysktgglgdvteglpeelakighkvctvaprfdqyedawdteiiqp
vnygqektnvryfhsykkgvdhiwvdhhvylsktplvnkklygpkdsvdyidnverfaml
sqaalavpllvplgakgsqgvmgentifvcndwhtsllplylkeyyqsqgifvnaktvml
lhniafqgrfpsskfdalnlpakylsdlsfntqfapppldekttepitspepmymlnwlk
agflncdqaltvspnfahevtsspmggveldavardvgltgitngtkietwnpqkdkfil
anynsrtinsgkklckvalqkecgltvdpdiplfgfigrlenqkgadviiaampklkqln
cqvvilgigspkleqelesvadkypfakgvarfdsklahfitagadyclmpsrfepcgln
qlyammygtipvvapvgglvdtvppqfgflmnkipmpkipgvtvseellqqgvdamivgm
kkalqeygtpkfkkmrldcmandvswkkpaakyvdifeqlvn

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gnfB (B:)
mgsshhhhhhssglvprgshmlnicfvstevapysktgglgdvteglpeelakighkvct
vaprfdqyedawdteiiqpvnygqektnvryfhsykkgvdhiwvdhhvylsktplvnkkl
ygpkdsvdyidnverfamlsqaalavpllvplgakgsqgvmgentifvcndwhtsllply
lkeyyqsqgifvnaktvmllhniafqgrfpsskfdalnlpakylsdlsfntqfappplde
kttepitspepmymlnwlkagflncdqaltvspnfahevtsspmggveldavardvgltg
itngtkietwnpqkdkfilanynsrtinsgkklckvalqkecgltvdpdiplfgfigrle
nqkgadviiaampklkqlncqvvilgigspkleqelesvadkypfakgvarfdsklahfi
tagadyclmpsrfepcglnqlyammygtipvvapvgglvdtvppqfgflmnkipmpkipg
vtvseellqqgvdamivgmkkalqeygtpkfkkmrldcmandvswkkpaakyvdifeqlv
nsqv

    Sequence, based on observed residues (ATOM records):
    >6gnfB (B:)
lvprgshmlnicfvstevapysktgglgdvteglpeelakighkvctvaprfdqyedawd
teiiqpvnygqektnvryfhsykkgvdhiwvdhhvylsyidnverfamlsqaalavpllv
plgakgsqgvmgentifvcndwhtsllplylkeyyqsqgifvnaktvmllhniafqgrfp
sskfdalnlpakylsdlsfntqmymlnwlkagflncdqaltvspnfahevtsspmggvel
davardvgltgitngtkietwnpqkdkfilanynsrtinsgkklckvalqkecgltvdpd
iplfgfigrlenqkgadviiaampklkqlncqvvilgigspkleqelesvadkypfakgv
arfdsklahfitagadyclmpsrfepcglnqlyammygtipvvapvgglvdtvppqfgfl
mnkipmpkipgvtvseellqqgvdamivgmkkalqeygtpkfkkmrldcmandvswkkpa
akyvdifeqlvn

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gnfC (C:)
mgsshhhhhhssglvprgshmlnicfvstevapysktgglgdvteglpeelakighkvct
vaprfdqyedawdteiiqpvnygqektnvryfhsykkgvdhiwvdhhvylsktplvnkkl
ygpkdsvdyidnverfamlsqaalavpllvplgakgsqgvmgentifvcndwhtsllply
lkeyyqsqgifvnaktvmllhniafqgrfpsskfdalnlpakylsdlsfntqfappplde
kttepitspepmymlnwlkagflncdqaltvspnfahevtsspmggveldavardvgltg
itngtkietwnpqkdkfilanynsrtinsgkklckvalqkecgltvdpdiplfgfigrle
nqkgadviiaampklkqlncqvvilgigspkleqelesvadkypfakgvarfdsklahfi
tagadyclmpsrfepcglnqlyammygtipvvapvgglvdtvppqfgflmnkipmpkipg
vtvseellqqgvdamivgmkkalqeygtpkfkkmrldcmandvswkkpaakyvdifeqlv
nsqv

    Sequence, based on observed residues (ATOM records):
    >6gnfC (C:)
sglvprgshmlnicfvstevapysktgglgdvteglpeelakighkvctvaprfdqyeda
wdteiiqpvnygqektnvryfhsykkgvdhiwvdhhvylsktplvnkklygpkdsvdyid
nverfamlsqaalavpllvplgakgsqgvmgentifvcndwhtsllplylkeyyqsqgif
vnaktvmllhniafqgrfpsskfdalnlpakylsdlsfntqfpmymlnwlkagflncdqa
ltvspnfahevtsspmggveldavardvgltgitngtkietwnpqkdkfilanynsrtin
sgkklckvalqkecgltvdpdiplfgfigrlenqkgadviiaampklkqlncqvvilgig
spkleqelesvadkypfakgvarfdsklahfitagadyclmpsrfepcglnqlyammygt
ipvvapvgglvdtvppqfgflmnkipmpkipgvtvseellqqgvdamivgmkkalqeygt
pkfkkmrldcmandvswkkpaakyvdifeqlvns