PDB entry 6gn6

View 6gn6 on RCSB PDB site
Description: alpha-l-fucosidase isoenzyme 1 from paenibacillus thiaminolyticus
Deposited on 2018-05-30, released 2018-12-26
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: alpha-l-fucosidase
    Species: Paenibacillus thiaminolyticus [TaxId:49283]
    Gene: aLfuk1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: alpha-l-fucosidase
    Species: Paenibacillus thiaminolyticus [TaxId:49283]
    Gene: aLfuk1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: alpha-l-fucosidase
    Species: Paenibacillus thiaminolyticus [TaxId:49283]
    Gene: aLfuk1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: alpha-l-fucosidase
    Species: Paenibacillus thiaminolyticus [TaxId:49283]
    Gene: aLfuk1
    Database cross-references and differences (RAF-indexed):
    • Uniprot E3PQQ9 (21-End)
      • expression tag (20)
  • Chain 'E':
    Compound: alpha-l-fucosidase
    Species: Paenibacillus thiaminolyticus [TaxId:49283]
    Gene: aLfuk1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: alpha-l-fucosidase
    Species: Paenibacillus thiaminolyticus [TaxId:49283]
    Gene: aLfuk1
    Database cross-references and differences (RAF-indexed):
    • Uniprot E3PQQ9 (21-End)
      • expression tag (17-20)
  • Heterogens: GLC, PGE, PEG, 1PE, PG4, P6G, NA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gn6A (A:)
mghhhhhhhhhhssghiegrhmtltareqriqwfnhdrfgmfihwglyaipargewvrsf
eripvedyekyfnsfnpvnydpkawakaakaagmkyavmttkhhdgfclfdsaltdykat
ntpagrdlireyadafraeglkvgfyysiidwhhpdypaygdrqhpmrdnaefkdrpqdf
nryldymhgqvkelltnygtidvlwfdfsyedmtgekwkatelvkmirelqpnvlidnrl
ggnikarepeiyagdfaspeqllpphgivnedgkplpweacitlnhhwgyhahdrdyktp
kqvvrglvecvskngnmllnvgpnakgeipqlsldvlgevgawmrangdsiygcgaaals
kpewgrytqkgnklyahildrgigpialqglngrvkearlladgaevniqtpwnavdypd
ylfvniptaqlpddfntvieltledae

    Sequence, based on observed residues (ATOM records):
    >6gn6A (A:)
tareqriqwfnhdrfgmfihwglyaipargewvrsferipvedyekyfnsfnpvnydpka
wakaakaagmkyavmttkhhdgfclfdsaltdykatntpagrdlireyadafraeglkvg
fyysiidwhhpdypaygdrqhpmrdnaefkdrpqdfnryldymhgqvkelltnygtidvl
wfdfsyedmtgekwkatelvkmirelqpnvlidnrlggnikarepeiyagdfaspeqllp
phgivnedgkplpweacitlnhhwgyhahdrdyktpkqvvrglvecvskngnmllnvgpn
akgeipqlsldvlgevgawmrangdsiygcgaaalskpewgrytqkgnklyahildrgig
pialqglngrvkearlladgaevniqtpwnavdypdylfvniptaqlpddfntvieltle
d

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gn6B (B:)
mghhhhhhhhhhssghiegrhmtltareqriqwfnhdrfgmfihwglyaipargewvrsf
eripvedyekyfnsfnpvnydpkawakaakaagmkyavmttkhhdgfclfdsaltdykat
ntpagrdlireyadafraeglkvgfyysiidwhhpdypaygdrqhpmrdnaefkdrpqdf
nryldymhgqvkelltnygtidvlwfdfsyedmtgekwkatelvkmirelqpnvlidnrl
ggnikarepeiyagdfaspeqllpphgivnedgkplpweacitlnhhwgyhahdrdyktp
kqvvrglvecvskngnmllnvgpnakgeipqlsldvlgevgawmrangdsiygcgaaals
kpewgrytqkgnklyahildrgigpialqglngrvkearlladgaevniqtpwnavdypd
ylfvniptaqlpddfntvieltledae

    Sequence, based on observed residues (ATOM records):
    >6gn6B (B:)
tareqriqwfnhdrfgmfihwglyaipargewvrsferipvedyekyfnsfnpvnydpka
wakaakaagmkyavmttkhhdgfclfdsaltdykatntpagrdlireyadafraeglkvg
fyysiidwhhpdypaygdrqhpmrdnaefkdrpqdfnryldymhgqvkelltnygtidvl
wfdfsyedmtgekwkatelvkmirelqpnvlidnrlggnikarepeiyagdfaspeqllp
phgivnedgkplpweacitlnhhwgyhahdrdyktpkqvvrglvecvskngnmllnvgpn
akgeipqlsldvlgevgawmrangdsiygcgaaalskpewgrytqkgnklyahildrgig
pialqglngrvkearlladgaevniqtpwnavdypdylfvniptaqlpddfntvieltle
d

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gn6C (C:)
mghhhhhhhhhhssghiegrhmtltareqriqwfnhdrfgmfihwglyaipargewvrsf
eripvedyekyfnsfnpvnydpkawakaakaagmkyavmttkhhdgfclfdsaltdykat
ntpagrdlireyadafraeglkvgfyysiidwhhpdypaygdrqhpmrdnaefkdrpqdf
nryldymhgqvkelltnygtidvlwfdfsyedmtgekwkatelvkmirelqpnvlidnrl
ggnikarepeiyagdfaspeqllpphgivnedgkplpweacitlnhhwgyhahdrdyktp
kqvvrglvecvskngnmllnvgpnakgeipqlsldvlgevgawmrangdsiygcgaaals
kpewgrytqkgnklyahildrgigpialqglngrvkearlladgaevniqtpwnavdypd
ylfvniptaqlpddfntvieltledae

    Sequence, based on observed residues (ATOM records):
    >6gn6C (C:)
tareqriqwfnhdrfgmfihwglyaipargewvrsferipvedyekyfnsfnpvnydpka
wakaakaagmkyavmttkhhdgfclfdsaltdykatntpagrdlireyadafraeglkvg
fyysiidwhhpdypaygdrqhpmrdnaefkdrpqdfnryldymhgqvkelltnygtidvl
wfdfsyedmtgekwkatelvkmirelqpnvlidnrlggnikarepeiyagdfaspeqllp
phgivnedgkplpweacitlnhhwgyhahdrdyktpkqvvrglvecvskngnmllnvgpn
akgeipqlsldvlgevgawmrangdsiygcgaaalskpewgrytqkgnklyahildrgig
pialqglngrvkearlladgaevniqtpwnavdypdylfvniptaqlpddfntvieltle
d

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6gn6D (D:)
mghhhhhhhhhhssghiegrhmtltareqriqwfnhdrfgmfihwglyaipargewvrsf
eripvedyekyfnsfnpvnydpkawakaakaagmkyavmttkhhdgfclfdsaltdykat
ntpagrdlireyadafraeglkvgfyysiidwhhpdypaygdrqhpmrdnaefkdrpqdf
nryldymhgqvkelltnygtidvlwfdfsyedmtgekwkatelvkmirelqpnvlidnrl
ggnikarepeiyagdfaspeqllpphgivnedgkplpweacitlnhhwgyhahdrdyktp
kqvvrglvecvskngnmllnvgpnakgeipqlsldvlgevgawmrangdsiygcgaaals
kpewgrytqkgnklyahildrgigpialqglngrvkearlladgaevniqtpwnavdypd
ylfvniptaqlpddfntvieltledae

    Sequence, based on observed residues (ATOM records):
    >6gn6D (D:)
hmtltareqriqwfnhdrfgmfihwglyaipargewvrsferipvedyekyfnsfnpvny
dpkawakaakaagmkyavmttkhhdgfclfdsaltdykatntpagrdlireyadafraeg
lkvgfyysiidwhhpdypaygdrqhpmrdnaefkdrpqdfnryldymhgqvkelltnygt
idvlwfdfsyedmtgekwkatelvkmirelqpnvlidnrlggnikarepeiyagdfaspe
qllpphgivnedgkplpweacitlnhhwgyhahdrdyktpkqvvrglvecvskngnmlln
vgpnakgeipqlsldvlgevgawmrangdsiygcgaaalskpewgrytqkgnklyahild
rgigpialqglngrvkearlladgaevniqtpwnavdypdylfvniptaqlpddfntvie
ltled

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6gn6E (E:)
mghhhhhhhhhhssghiegrhmtltareqriqwfnhdrfgmfihwglyaipargewvrsf
eripvedyekyfnsfnpvnydpkawakaakaagmkyavmttkhhdgfclfdsaltdykat
ntpagrdlireyadafraeglkvgfyysiidwhhpdypaygdrqhpmrdnaefkdrpqdf
nryldymhgqvkelltnygtidvlwfdfsyedmtgekwkatelvkmirelqpnvlidnrl
ggnikarepeiyagdfaspeqllpphgivnedgkplpweacitlnhhwgyhahdrdyktp
kqvvrglvecvskngnmllnvgpnakgeipqlsldvlgevgawmrangdsiygcgaaals
kpewgrytqkgnklyahildrgigpialqglngrvkearlladgaevniqtpwnavdypd
ylfvniptaqlpddfntvieltledae

    Sequence, based on observed residues (ATOM records):
    >6gn6E (E:)
tareqriqwfnhdrfgmfihwglyaipargewvrsferipvedyekyfnsfnpvnydpka
wakaakaagmkyavmttkhhdgfclfdsaltdykatntpagrdlireyadafraeglkvg
fyysiidwhhpdypaygdrqhpmrdnaefkdrpqdfnryldymhgqvkelltnygtidvl
wfdfsyedmtgekwkatelvkmirelqpnvlidnrlggnikarepeiyagdfaspeqllp
phgivnedgkplpweacitlnhhwgyhahdrdyktpkqvvrglvecvskngnmllnvgpn
akgeipqlsldvlgevgawmrangdsiygcgaaalskpewgrytqkgnklyahildrgig
pialqglngrvkearlladgaevniqtpwnavdypdylfvniptaqlpddfntvieltle
d

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6gn6F (F:)
mghhhhhhhhhhssghiegrhmtltareqriqwfnhdrfgmfihwglyaipargewvrsf
eripvedyekyfnsfnpvnydpkawakaakaagmkyavmttkhhdgfclfdsaltdykat
ntpagrdlireyadafraeglkvgfyysiidwhhpdypaygdrqhpmrdnaefkdrpqdf
nryldymhgqvkelltnygtidvlwfdfsyedmtgekwkatelvkmirelqpnvlidnrl
ggnikarepeiyagdfaspeqllpphgivnedgkplpweacitlnhhwgyhahdrdyktp
kqvvrglvecvskngnmllnvgpnakgeipqlsldvlgevgawmrangdsiygcgaaals
kpewgrytqkgnklyahildrgigpialqglngrvkearlladgaevniqtpwnavdypd
ylfvniptaqlpddfntvieltledae

    Sequence, based on observed residues (ATOM records):
    >6gn6F (F:)
egrhmtltareqriqwfnhdrfgmfihwglyaipargewvrsferipvedyekyfnsfnp
vnydpkawakaakaagmkyavmttkhhdgfclfdsaltdykatntpagrdlireyadafr
aeglkvgfyysiidwhhpdypaygdrqhpmrdnaefkdrpqdfnryldymhgqvkelltn
ygtidvlwfdfsyedmtgekwkatelvkmirelqpnvlidnrlggnikarepeiyagdfa
speqllpphgivnedgkplpweacitlnhhwgyhahdrdyktpkqvvrglvecvskngnm
llnvgpnakgeipqlsldvlgevgawmrangdsiygcgaaalskpewgrytqkgnklyah
ildrgigpialqglngrvkearlladgaevniqtpwnavdypdylfvniptaqlpddfnt
vieltled