PDB entry 6gmr

View 6gmr on RCSB PDB site
Description: pvhl:elob:eloc in complex with (4-(1h-pyrrol-1-yl)phenyl)methanol
Deposited on 2018-05-28, released 2018-08-08
The last revision was dated 2018-09-05, with a file datestamp of 2018-08-31.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'B':
    Compound: Elongin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: ELOB, TCEB2
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Elongin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: ELOC, TCEB1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15369 (1-96)
      • initiating methionine (0)
  • Chain 'H':
    Compound: Hypoxia inducible factor 1alpha, residues 559-577
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GMR
  • Chain 'V':
    Compound: von hippel-lindau disease tumor suppressor
    Species: Homo sapiens [TaxId:9606]
    Gene: VHL
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, F4K, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gmrB (B:)
mdvflmirrhkttiftdakesstvfelkrivegilkrppdeqrlykddqllddgktlgec
gftsqtarpqapatvglafraddtfealciepfssppelpdvmkpqdsgssaneqavq

    Sequence, based on observed residues (ATOM records):
    >6gmrB (B:)
mdvflmirrhkttiftdakesstvfelkrivegilkrppdeqrlykddqllddgktlgec
gftsqtarpqapatvglafraddtfealciepfssppelpdvmkp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gmrC (C:)
mmyvklissdghefivkrehaltsgtikamlsgpgqfaenetnevnfreipshvlskvcm
yftykvrytnssteipefpiapeialellmaanfldc

    Sequence, based on observed residues (ATOM records):
    >6gmrC (C:)
mmyvklissdghefivkrehaltsgtikamlsgpnevnfreipshvlskvcmyftykvry
tnssteipefpiapeialellmaanfldc

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6gmrH (H:)
dealapyipmdddfqlrsf

    Sequence, based on observed residues (ATOM records):
    >6gmrH (H:)
ealapyipmdddfqlr

  • Chain 'V':
    Sequence, based on SEQRES records:
    >6gmrV (V:)
gshmeagrprpvlrsvnsrepsqvifcnrsprvvlpvwlnfdgepqpyptlppgtgrrih
syrghlwlfrdagthdgllvnqtelfvpslnvdgqpifanitlpvytlkerclqvvrslv
kpenyrrldivrslyedledhpnvqkdlerltqeriahqrmgd

    Sequence, based on observed residues (ATOM records):
    >6gmrV (V:)
rpvlrsvnsrepsqvifcnrsprvvlpvwlnfdgepqpyptlppgtgrrihsyrghlwlf
rdagthdgllvnqtelfvpslnvdgqpifanitlpvytlkerclqvvrslvkpenyrrld
ivrslyedledhpnvqkdlerltqeriah