PDB entry 6gmg

View 6gmg on RCSB PDB site
Description: structure of a glutamine donor mimicking inhibitory peptide shaped by the catalytic cleft of microbial transglutaminase
Deposited on 2018-05-25, released 2018-10-24
The last revision was dated 2018-12-26, with a file datestamp of 2018-12-21.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein-glutamine gamma-glutamyltransferase
    Species: Streptomyces mobaraensis NBRC 13819 = DSM 40847 [TaxId:1223523]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: protein-glutamine gamma-glutamyltransferase
    Species: Streptomyces mobaraensis NBRC 13819 = DSM 40847 [TaxId:1223523]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Papain inhibitor
    Species: Streptomyces mobaraensis, synthetic [TaxId:35621]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GMG (0-End)
  • Chain 'D':
    Compound: Papain inhibitor
    Species: Streptomyces mobaraensis, synthetic [TaxId:35621]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GMG (0-8)
  • Heterogens: FLC, PEG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6gmgA (A:)
dsddrvtppaepldrmpdpyrpsygraetvvnnyirkwqqvyshrdgrkqqmteeqrewl
sygcvgvtwvnsgqyptnrlafasfdedrfknelkngrprsgetraefegrvakesfdee
kgfqrarevasvmnralenahdesayldnlkkelangndalrnedarspfysalrntpsf
kernggnhdpsrmkaviyskhfwsgqdrsssadkrkygdpdafrpapgtglvdmsrdrni
prsptspgegfvnfdygwfgaqteadadktvwthgnhyhapngslgamhvyeskfrnwse
gysdfdrgayvitfipkswntapdkvkqgwp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gmgB (B:)
dsddrvtppaepldrmpdpyrpsygraetvvnnyirkwqqvyshrdgrkqqmteeqrewl
sygcvgvtwvnsgqyptnrlafasfdedrfknelkngrprsgetraefegrvakesfdee
kgfqrarevasvmnralenahdesayldnlkkelangndalrnedarspfysalrntpsf
kernggnhdpsrmkaviyskhfwsgqdrsssadkrkygdpdafrpapgtglvdmsrdrni
prsptspgegfvnfdygwfgaqteadadktvwthgnhyhapngslgamhvyeskfrnwse
gysdfdrgayvitfipkswntapdkvkqgwp

    Sequence, based on observed residues (ATOM records):
    >6gmgB (B:)
sddrvtppaepldrmpdpyrpsygraetvvnnyirkwqqvyshrdgrkqqmteeqrewls
ygcvgvtwvnsgqyptnrlafasfdedrfknelkngrprsgetraefegrvakesfdeek
gfqrarevasvmnralenahdesayldnlkkelangndalrnedarspfysalrntpsfk
ernggnhdpsrmkaviyskhfwsgqdrsssadkrkygdpdafrpapgtglvdmsrdrnip
rsptspgegfvnfdygwfgaqteadadktvwthgnhyhapngslgamhvyeskfrnwseg
ysdfdrgayvitfipkswntapdkvkqgwp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gmgC (C:)
dipigskmt

    Sequence, based on observed residues (ATOM records):
    >6gmgC (C:)
dipigskm

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6gmgD (D:)
dipigskmt