PDB entry 6gl1

View 6gl1 on RCSB PDB site
Description: hla-e*01:03 in complex with the hiv epitope, rl9hiv
Deposited on 2018-05-22, released 2018-08-08
The last revision was dated 2018-08-22, with a file datestamp of 2018-08-17.
Experiment type: XRAY
Resolution: 2.62 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC class I antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-E
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • initiating methionine (0)
  • Chain 'C':
    Compound: MHC class I antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-E
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • initiating methionine (0)
  • Chain 'E':
    Compound: MHC class I antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-E
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • initiating methionine (0)
  • Chain 'G':
    Compound: MHC class I antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-E
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • initiating methionine (0)
  • Chain 'P':
    Compound: arg-met-tyr-ser-pro-thr-ser-ile-leu
    Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GL1 (0-8)
  • Chain 'Q':
    Compound: arg-met-tyr-ser-pro-thr-ser-ile-leu
    Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GL1 (0-8)
  • Chain 'R':
    Compound: arg-met-tyr-ser-pro-thr-ser-ile-leu
    Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GL1 (0-8)
  • Chain 'T':
    Compound: arg-met-tyr-ser-pro-thr-ser-ile-leu
    Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GL1 (0-8)
  • Heterogens: SO4, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6gl1A (A:)
gshslkyfhtsvsrpgrgeprfisvgyvddtqfvrfdndaasprmvprapwmeqegseyw
dretrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydg
kdyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketll
hleppkthvthhpisdheatlrcwalgfypaeitltwqqdgeghtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpepvtlrw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6gl1B (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gl1C (C:)
gshslkyfhtsvsrpgrgeprfisvgyvddtqfvrfdndaasprmvprapwmeqegseyw
dretrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydg
kdyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketll
hleppkthvthhpisdheatlrcwalgfypaeitltwqqdgeghtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpepvtlrw

    Sequence, based on observed residues (ATOM records):
    >6gl1C (C:)
gshslkyfhtsvsrpgreprfisvgyvddtqfvrfdndaasprmvprapwmeqegseywd
retrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydgk
dyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketllh
leppkthvthhpisdheatlrcwalgfypaeitltwqqdgeghtqdtelvetrpagdgtf
qkwaavvvpsgeeqrytchvqheglpepvtlrw

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6gl1D (D:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6gl1E (E:)
gshslkyfhtsvsrpgrgeprfisvgyvddtqfvrfdndaasprmvprapwmeqegseyw
dretrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydg
kdyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketll
hleppkthvthhpisdheatlrcwalgfypaeitltwqqdgeghtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpepvtlrw

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6gl1F (F:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6gl1G (G:)
gshslkyfhtsvsrpgrgeprfisvgyvddtqfvrfdndaasprmvprapwmeqegseyw
dretrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydg
kdyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketll
hleppkthvthhpisdheatlrcwalgfypaeitltwqqdgeghtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpepvtlrw

    Sequence, based on observed residues (ATOM records):
    >6gl1G (G:)
gshslkyfhtsvsrpgrgeprfisvgyvddtqfvrfdndaasprmvprapwmeqegseyw
dretrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydg
kdyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketll
hleppkthvthheatlrcwalgfypaeitlttqdtelvetrpagdgtfqkwaachvqheg
lpepvtlrw

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6gl1H (H:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >6gl1P (P:)
rmysptsil

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >6gl1Q (Q:)
rmysptsil

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records:
    >6gl1R (R:)
rmysptsil

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records:
    >6gl1T (T:)
rmysptsil