PDB entry 6gkm

View 6gkm on RCSB PDB site
Description: cryoem structure of the mda5-dsrna filament in complex with atp (10 mm)
Deposited on 2018-05-21, released 2018-11-21
The last revision was dated 2020-11-18, with a file datestamp of 2020-11-13.
Experiment type: EM
Resolution: 3.87 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Interferon-induced helicase C domain-containing protein 1
    Species: Mus musculus [TaxId:10090]
    Gene: Ifih1
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: RNA (5'-r(p*cp*ap*ap*gp*cp*cp*gp*ap*gp*gp*ap*gp*ap*g)-3')
    Species: PSEUDOMONAS PHAGE PHI6, synthetic [TaxId:10879]
  • Chain 'Y':
    Compound: RNA (5'-r(p*cp*up*cp*up*cp*cp*up*cp*gp*gp*cp*up*up*g)-3')
    Species: PSEUDOMONAS PHAGE PHI6, synthetic [TaxId:10879]
  • Heterogens: ZN, ATP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gkmA (A:)
msivcsaedsfrnlilffrprlkmyiqvepvldhliflsaetkeqilkkintcgntsaae
lllstleqgqwplgwtqmfvealehsgnplaaryvkptltdlpspssetahdeclhlltl
lqptlvdkllindvldtcfekglltvedrnrisaagnsgnesgvrellrrivqkenwfst
fldvlrqtgndalfqeltgggcpedntdlansshrdgpaanecllpavdessleteawnv
ddilpeasctdssvttesdtslaegsvscfdeslghnsnmgrdsgtmgsdsdesviqtkr
vspepelqlrpyqmevaqpaldgkniiiclptgsgktrvavyitkdhldkkkqasesgkv
ivlvnkvmlaeqlfrkefnpylkkwyriiglsgdtqlkisfpevvksydviistaqilen
sllnlesgdddgvqlsdfsliiidechhtnkeavynnimrrylkqklrnndlkkqnkpai
plpqilgltaspgvgaakkqseaekhilnicanldaftiktvkenlgqlkhqikepckkf
viaddtrenpfkeklleimasiqtycqkspmsdfgtqhyeqwaiqmekkaakdgnrkdrv
caehlrkynealqindtirmidayshletfytdekekkfavlndskkslkldetdeflmn
lffdnkkmlkklaenpkyenekliklrntileqftrseessrgiiftktrqstyalsqwi
menakfaevgvkahhligaghssevkpmtqteqkeviskfrtgeinlliattvaeegldi
kecniviryglvtneiamvqargraradestyvlvtssgsgvtereivndfrekmmykai
nrvqnmkpeeyahkilelqvqsilekkmkvkrsiakqyndnpslitllckncsmlvcsge
nihviekmhhvnmtpefkglyivrenkalqkkfadyqtngeiickcgqawgtmmvhkgld
lpclkirnfvvnfknnspkkqykkwvelpirfpdldyseyclysded

    Sequence, based on observed residues (ATOM records):
    >6gkmA (A:)
lqlrpyqmevaqpaldgkniiiclptgsgktrvavyitkdhldkkkqasesgkvivlvnk
vmlaeqlfrkefnpylkkwyriiglsgdtqlkisfpevvksydviistaqilensllnle
sgdddgvqlsdfsliiidechhtnkeavynnimrrylkqklrnndlkkqnkpaiplpqil
gltaspgvgaakkqseaekhilnicanldaftiktvkenlgqlkhqikepckkfviaddt
renpfkeklleimasiqtycqkspmsdfgtqhyeqwaiqmekkaakdgnrkdrvcaehlr
kynealqindtirmidayshletfytdekekkfavlndsslkldetdeflmnlffdnkkm
lkklaenpkyenekliklrntileqftrseessrgiiftktrqstyalsqwimenakfae
vgvkahhligaghssevkpmtqteqkeviskfrtgeinlliattvaeegldikecnivir
yglvtneiamvqargraradestyvlvtssgsgvtereivndfrekmmykainrvqnmkp
eeyahkilelqvqsilekkmkvkrsiayndnpslitllckncsmlvcsgenihviekmhh
vnmtpefkglyivrenkalqkdyqtngeiickcgqawgtmmvhkgldlpclkirnfvvnf
knnspkkqykkwvelpirfpdldyseycl

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.