PDB entry 6gkk
View 6gkk on RCSB PDB site
Description: Translation initiation factor 4E in complex with beta-phosphorothioate trinucleotide mRNA 5' cap diastereomer 1 (m7GppSpApG D1)
Class: translation
Keywords: Protein-ligand complex, translation, translation initiation factor, eIF4E, mRNA 5' cap, m7GppSpApG, phosphorothioate, thiophosphate
Deposited on
2018-05-21, released
2019-06-19
The last revision prior to the SCOPe 2.07 freeze date was dated
2019-06-19, with a file datestamp of
2019-06-14.
Experiment type: XRAY
Resolution: 1.86 Å
R-factor: N/A
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: eukaryotic translation initiation factor 4e
Species: Mus musculus [TaxId:10090]
Gene: eif4e
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6gkka_ - Chain 'B':
Compound: eukaryotic translation initiation factor 4e
Species: Mus musculus [TaxId:10090]
Gene: eif4e
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6gkkb_ - Chain 'C':
Compound: eukaryotic translation initiation factor 4e
Species: Mus musculus [TaxId:10090]
Gene: eif4e
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6gkkc_ - Chain 'D':
Compound: eukaryotic translation initiation factor 4e
Species: Mus musculus [TaxId:10090]
Gene: eif4e
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6gkkd_ - Heterogens: WZO, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6gkkA (A:)
vanpehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmp
gcdyslfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysd
dvcgavvnvrakgdkiaiwttecenrdavthigrvykerlglppkivigyqshadtatks
gsttknrfvv
Sequence, based on observed residues (ATOM records): (download)
>6gkkA (A:)
npehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmpgc
dyslfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysddv
cgavvnvrakgdkiaiwttecenrdavthigrvykerlglppkivigyqshadtatknrf
vv
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6gkkB (B:)
vanpehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmp
gcdyslfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysd
dvcgavvnvrakgdkiaiwttecenrdavthigrvykerlglppkivigyqshadtatks
gsttknrfvv
Sequence, based on observed residues (ATOM records): (download)
>6gkkB (B:)
vanpehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmp
gcdyslfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysd
dvcgavvnvrakgdkiaiwttecenrdavthigrvykerlglppkivigyqshadtatkn
rfvv
- Chain 'C':
Sequence, based on SEQRES records: (download)
>6gkkC (C:)
vanpehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmp
gcdyslfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysd
dvcgavvnvrakgdkiaiwttecenrdavthigrvykerlglppkivigyqshadtatks
gsttknrfvv
Sequence, based on observed residues (ATOM records): (download)
>6gkkC (C:)
pehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmpgcd
yslfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysddvc
gavvnvrakgdkiaiwttecenrdavthigrvykerlglppkivigyqshadtknrfvv
- Chain 'D':
Sequence, based on SEQRES records: (download)
>6gkkD (D:)
vanpehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmp
gcdyslfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysd
dvcgavvnvrakgdkiaiwttecenrdavthigrvykerlglppkivigyqshadtatks
gsttknrfvv
Sequence, based on observed residues (ATOM records): (download)
>6gkkD (D:)
ehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmpgcdy
slfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysddvcg
avvnvrakgdkiaiwttecenrdavthigrvykerlglppkivigyqshadtknrfvv