PDB entry 6gkh

View 6gkh on RCSB PDB site
Description: cryoem structure of the mda5-dsrna filament in complex with adp-alf4
Deposited on 2018-05-21, released 2018-11-21
The last revision was dated 2020-11-18, with a file datestamp of 2020-11-13.
Experiment type: EM
Resolution: 4.06 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Interferon-induced helicase C domain-containing protein 1
    Species: Mus musculus [TaxId:10090]
    Gene: Ifih1
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: RNA (5'-r(p*gp*up*cp*ap*ap*gp*cp*cp*gp*ap*gp*gp*ap*gp*a)-3')
    Species: PSEUDOMONAS PHAGE PHI6, synthetic [TaxId:10879]
  • Chain 'Y':
    Compound: RNA (5'-r(p*up*cp*up*cp*cp*up*cp*gp*gp*cp*up*up*gp*ap*c)-3')
    Species: PSEUDOMONAS PHAGE PHI6, synthetic [TaxId:10879]
  • Heterogens: ADP, ALF, MG, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gkhA (A:)
msivcsaedsfrnlilffrprlkmyiqvepvldhliflsaetkeqilkkintcgntsaae
lllstleqgqwplgwtqmfvealehsgnplaaryvkptltdlpspssetahdeclhlltl
lqptlvdkllindvldtcfekglltvedrnrisaagnsgnesgvrellrrivqkenwfst
fldvlrqtgndalfqeltgggcpedntdlansshrdgpaanecllpavdessleteawnv
ddilpeasctdssvttesdtslaegsvscfdeslghnsnmgrdsgtmgsdsdesviqtkr
vspepelqlrpyqmevaqpaldgkniiiclptgsgktrvavyitkdhldkkkqasesgkv
ivlvnkvmlaeqlfrkefnpylkkwyriiglsgdtqlkisfpevvksydviistaqilen
sllnlesgdddgvqlsdfsliiidechhtnkeavynnimrrylkqklrnndlkkqnkpai
plpqilgltaspgvgaakkqseaekhilnicanldaftiktvkenlgqlkhqikepckkf
viaddtrenpfkeklleimasiqtycqkspmsdfgtqhyeqwaiqmekkaakdgnrkdrv
caehlrkynealqindtirmidayshletfytdekekkfavlndskkslkldetdeflmn
lffdnkkmlkklaenpkyenekliklrntileqftrseessrgiiftktrqstyalsqwi
menakfaevgvkahhligaghssevkpmtqteqkeviskfrtgeinlliattvaeegldi
kecniviryglvtneiamvqargraradestyvlvtssgsgvtereivndfrekmmykai
nrvqnmkpeeyahkilelqvqsilekkmkvkrsiakqyndnpslitllckncsmlvcsge
nihviekmhhvnmtpefkglyivrenkalqkkfadyqtngeiickcgqawgtmmvhkgld
lpclkirnfvvnfknnspkkqykkwvelpirfpdldyseyclysded

    Sequence, based on observed residues (ATOM records):
    >6gkhA (A:)
elqlrpyqmevaqpaldgkniiiclptgsgktrvavyitkdhldkkkqasesgkvivlvn
kvmlaeqlfrkefnpylkkwyriiglsgdtqlkisfpevvksydviistaqilensllnl
esgdddgvqlsdfsliiidechhtnkeavynnimrrylkqklrnndlkkqnkpaiplpqi
lgltaspgvgaakkqseaekhilnicanldaftiktvkenlgqlkhqikepckkfviadd
trenpfkeklleimasiqtycqkspmsdfgtqhyeqwaiqmekkaakdgnrkdrvcaehl
rkynealqindtirmidayshletfytdekekkfavlndkslkldetdeflmnlffdnkk
mlkklaenpkyenekliklrntileqftrseessrgiiftktrqstyalsqwimenakfa
evgvkahhligaghssevkpmtqteqkeviskfrtgeinlliattvaeegldikecnivi
ryglvtneiamvqargraradestyvlvtssgsgvtereivndfrekmmykainrvqnmk
peeyahkilelqvqsilekkmkvkrsiakqyndnpslitllckncsmlvcsgenihviek
mhhvnmtpefkglyivrenqtngeiickcgqawgtmmvhkgldlpclkirnfvvnfknns
pkkqykkwvelpirfpdldyseycl

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.