PDB entry 6gj3

View 6gj3 on RCSB PDB site
Description: the baseplate complex from the type vi secretion system
Deposited on 2018-05-15, released 2018-10-17
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 4.3 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'C':
    Compound: TssG
    Species: Escherichia coli [TaxId:562]
    Gene: impH, ECDEC6A_3652
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: TssK
    Species: Escherichia coli [TaxId:562]
    Gene: ECDEC6A_3669
    Database cross-references and differences (RAF-indexed):
    • Uniprot H4UNX9 (0-End)
      • conflict (201)
  • Chain 'E':
    Compound: TssK
    Species: Escherichia coli [TaxId:562]
    Gene: ECDEC6A_3669
    Database cross-references and differences (RAF-indexed):
    • Uniprot H4UNX9 (0-End)
      • conflict (201)
  • Chain 'F':
    Compound: TssK
    Species: Escherichia coli [TaxId:562]
    Gene: ECDEC6A_3669
    Database cross-references and differences (RAF-indexed):
    • Uniprot H4UNX9 (0-End)
      • conflict (201)
  • Chain 'G':
    Compound: TssK
    Species: Escherichia coli [TaxId:562]
    Gene: ECDEC6A_3669
    Database cross-references and differences (RAF-indexed):
    • Uniprot H4UNX9 (0-End)
      • conflict (201)
  • Chain 'H':
    Compound: TssK
    Species: Escherichia coli [TaxId:562]
    Gene: ECDEC6A_3669
    Database cross-references and differences (RAF-indexed):
    • Uniprot H4UNX9 (0-End)
      • conflict (201)
  • Chain 'I':
    Compound: TssK
    Species: Escherichia coli [TaxId:562]
    Gene: ECDEC6A_3669
    Database cross-references and differences (RAF-indexed):
    • Uniprot H4UNX9 (0-End)
      • conflict (201)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gj3C (C:)
mpahyisdiaqqregheaaadfldifshrlitqyyriwrkysypatfeaggqdktsqyll
glarlgipgcaqniatpvsrflallplmllpgrtaegltslvtllapgtqarvwhhdrrr
iplktpltmrvhhpvslksrpvmgdhatdvngqvllqlstqtgsevqgwlpgghlysdll
allhvylgsrldvrlqlcversllpdarlscrpaagspqlgrtavmrtqakittsaarvm
tislgryqrvqehyqrketqengdyrw

    Sequence, based on observed residues (ATOM records):
    >6gj3C (C:)
hdrrriplktpltmrvhhpvslksrpvmgdhatdvnsllpdarlscrpaagspqlgrtav
mr

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6gj3D (D:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlleaslpsrvvfielkqkgvmwegalhdarlregadfwlsvrssmpghelqt
kfpqlckagspddvsevvnvalsgviirpvthvpaaiplrlenqyfaldlstdaaramld
agrctfytpaslgdvklelfavlrt

    Sequence, based on observed residues (ATOM records):
    >6gj3D (D:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlle

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6gj3E (E:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlleaslpsrvvfielkqkgvmwegalhdarlregadfwlsvrssmpghelqt
kfpqlckagspddvsevvnvalsgviirpvthvpaaiplrlenqyfaldlstdaaramld
agrctfytpaslgdvklelfavlrt

    Sequence, based on observed residues (ATOM records):
    >6gj3E (E:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlle

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6gj3F (F:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlleaslpsrvvfielkqkgvmwegalhdarlregadfwlsvrssmpghelqt
kfpqlckagspddvsevvnvalsgviirpvthvpaaiplrlenqyfaldlstdaaramld
agrctfytpaslgdvklelfavlrt

    Sequence, based on observed residues (ATOM records):
    >6gj3F (F:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlle

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6gj3G (G:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlleaslpsrvvfielkqkgvmwegalhdarlregadfwlsvrssmpghelqt
kfpqlckagspddvsevvnvalsgviirpvthvpaaiplrlenqyfaldlstdaaramld
agrctfytpaslgdvklelfavlrt

    Sequence, based on observed residues (ATOM records):
    >6gj3G (G:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlleaslpsrvvfielkqkgvmwegalhdarlregadfwlsvrssmpghelqt
kfpqlckagspddvsevvnvalsgviirpvthvpaaiplrlenqyfaldlstdaaramld
agrctfytpaslgdvklelfavlr

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6gj3H (H:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlleaslpsrvvfielkqkgvmwegalhdarlregadfwlsvrssmpghelqt
kfpqlckagspddvsevvnvalsgviirpvthvpaaiplrlenqyfaldlstdaaramld
agrctfytpaslgdvklelfavlrt

    Sequence, based on observed residues (ATOM records):
    >6gj3H (H:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlleaslpsrvvfielkqkgvmwegalhdarlregadfwlsvrssmpghelqt
kfpqlckagspddvsevvnvalsgviirpvthvpaaiplrlenqyfaldlstdaaramld
agrctfytpaslgdvklelfavlr

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6gj3I (I:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlleaslpsrvvfielkqkgvmwegalhdarlregadfwlsvrssmpghelqt
kfpqlckagspddvsevvnvalsgviirpvthvpaaiplrlenqyfaldlstdaaramld
agrctfytpaslgdvklelfavlrt

    Sequence, based on observed residues (ATOM records):
    >6gj3I (I:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlle