PDB entry 6gj1

View 6gj1 on RCSB PDB site
Description: the baseplate complex from the type vi secretion system
Deposited on 2018-05-15, released 2018-10-17
The last revision was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: EM
Resolution: 4.7 Å
R-factor: N/A
AEROSPACI score: 0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative type VI secretion protein
    Species: Escherichia coli [TaxId:562]
    Gene: EC042_4542
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Putative type VI secretion protein
    Species: Escherichia coli [TaxId:562]
    Gene: EC042_4542
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: TssG
    Species: Escherichia coli [TaxId:562]
    Gene: EC55989_3321
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: TssE
    Species: Escherichia coli [TaxId:562]
    Gene: EC55989_3319
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gj1A (A:)
mddltlryfdaemrylreagkafaqahpdraamldldkagtpdpcverlfegfafsmgrl
rqkidddlpelteslvsmlwphylrtipslsvvaltprlsvmkmaetvpaglevtsrpvg
pgntvcryrttraiplnplavekvvmttepdgrsvlkigfacseladwsqvdlhrlslyl
aaeapvsstlhlmmtkrlaalylrlpgnderiridgwfspggfaeedrlwpkgdsafsgy
qllleyftfrekfmfvhlnglenvslpagisgfdlevvlsqpwpadlpvtddalclhcvp
vinlftleadpliingleseyllrpkrlqdgyteiysvdavtgsgrtgsaeyvpftsfrh
rggmlrhdaperyyhtrvkrgvtgmydtwlilggqrweadrmperetlslritgtngqlp
rralqstlldrceqvlqapvsvrnlckptlpvypptedrfhwrvmshlgtgflnmlssae
vlrgtlalynwrddelnhrrldailavqhhriqrfekgfllrgldvevtldgngfagegd
ihlfgemlnrflalyadmnqfnqltlivqpegkcirwkenhnprlpg

    Sequence, based on observed residues (ATOM records):
    >6gj1A (A:)
ltlryfdaemrylreagkafaqahpdraamldldkagtpdpcverlfegfafsmgrlrqk
idddlpelteslvsmlwphylrtipslsvvaltprlsvmkmaetvpaglevtsrpvgpgn
tvcryrttraiplnplavekvvmttepdgrsvlkigfacseladwsqvdlhrlslylaae
apvsstlhlmmtkrlaalylrlpgnderiridgwfspggfaeedrlwpkgdsafsgyqll
leyftfrekfmfvhlnglenvslpagisgfdlevvlsqpwpadlpvtddalclhcvpvin
lftleadpliingleseyllrpkrlqdgyteiysvdavtgsgrtgsaeyvpftsfrhrgg
mlrhdaperyyhtrvkrgvtgmydtwlilggqrweadrmperetlslritgtngqlprra
lqstlldrceqvlqapvsvrnlckptlpvypptedrfhwrvmshlgtgflnmlssaevlr
gtlalynwrddelnhrrldailavqhhriqrfekgfllrgldvevtldgngfagegdihl
fgemlnrflalyadmnqfnqltlivqpegkcirwkenhnprlpg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gj1B (B:)
mddltlryfdaemrylreagkafaqahpdraamldldkagtpdpcverlfegfafsmgrl
rqkidddlpelteslvsmlwphylrtipslsvvaltprlsvmkmaetvpaglevtsrpvg
pgntvcryrttraiplnplavekvvmttepdgrsvlkigfacseladwsqvdlhrlslyl
aaeapvsstlhlmmtkrlaalylrlpgnderiridgwfspggfaeedrlwpkgdsafsgy
qllleyftfrekfmfvhlnglenvslpagisgfdlevvlsqpwpadlpvtddalclhcvp
vinlftleadpliingleseyllrpkrlqdgyteiysvdavtgsgrtgsaeyvpftsfrh
rggmlrhdaperyyhtrvkrgvtgmydtwlilggqrweadrmperetlslritgtngqlp
rralqstlldrceqvlqapvsvrnlckptlpvypptedrfhwrvmshlgtgflnmlssae
vlrgtlalynwrddelnhrrldailavqhhriqrfekgfllrgldvevtldgngfagegd
ihlfgemlnrflalyadmnqfnqltlivqpegkcirwkenhnprlpg

    Sequence, based on observed residues (ATOM records):
    >6gj1B (B:)
ltlryfdaemrylreagkafaqahpdraamldldkagtpdpcverlfegfafsmgrlrqk
idddlpelteslvsmlwphylrtipslsvvaltprlsvmkmaetvpaglevtsrpvgpgn
tvcryrttraiplnplavekvvmttepdgrsvlkigfacseladwsqvdlhrlslylaae
apvsstlhlmmtkrlaalylrlpgnderiridgwfspggfaeedrlwpkgdsafsgyqll
leyftfrekfmfvhlnglenvslpagisgfdlevvlsqpwpadlpvtddalclhcvpvin
lftleadpliingleseyllrpkrlqdgyteiysvdavtgsgrtgsaeyvpftsfrhrgg
mlrhdaperyyhtrvkrgvtgmydtwlilggqrweadrmperetlslritgtngqlprra
lqstlldrceqvlqapvsvrnlckptlpvypptedrfhwrvmshlgtgflnmlssaevlr
gtlalynwrddelnhrrldailavqhhriqrfekgfllrgldvevtldgngfagegdihl
fgemlnrflalyadmnqfnqltlivqpegkcirwkenhnprlp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gj1C (C:)
mhpverksqsaparlitryrkqlpyinfyrfcqlleqsqpdqppigsgwqarqeavrfcp
ypgmgfpaseikdavipeeshlppivhvtfmglygvtsplpahyisdiaqqregheaaad
fldifshrlitqyyriwrkysypatfeaggqdktsqyllglarlgipgcaqniatpvsrf
lallplmllpgrtaegltslvtllapgtqarvwhhdrrriplktpltmrvhhpvslksrp
vmgdhatdvngqvllqlstqtgsevqgwlpgghlysdllallhvylgsrldvrlqlcver
sllpdarlscrpaagspqlgrtavmrtqakiatsaarvmtislgryqrvqehyqrketqe
ngdyrw

    Sequence, based on observed residues (ATOM records):
    >6gj1C (C:)
sqsaparlitryrkqlpyinfyrfcqlleqsqpdqppigsgwqarqeavrfcpypgmgfp
aseikdavipeeshlppivhvtfmglygvtsplpahyisdiaqqregheaaadfldifsh
rlitqyyriwrkysypatfeaggqdktsqyllglarlgipgcaqniatpvsrflallplm
llpgrtaegltslvtllapgtqarvwhhdrrriplktpltmrvhhpvslksrpvmgdhat
dvngqvllqlstqtgsevqgwlpgghlysdllallhvylgsrldvrlqlcversllpdar
lscrpaagspqlgrtavmrtqakiatsaarvmtislgryqrvqehyqrke

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6gj1D (D:)
mprpslyeilygnftgglelnqvgeeeqvilsvldnmqrilntragslkhlpdyglpdit
tilqgmpgtahqlmrvlsdvllkyeprikrvdvtmqeqtqpgelhyvidaelkdaglvry
gttfipegrvllrhlkqqryvqt

    Sequence, based on observed residues (ATOM records):
    >6gj1D (D:)
vgeeeqvilsvldnmqrilntragslkhlpdyglpdittilqgmpgtahqlmrvlsdvll
kyeprikrvdvtmqeqtqpgelhyvidaelkdaglvrygttfipegrvllrhlkqqryvq
t