PDB entry 6giy

View 6giy on RCSB PDB site
Description: the baseplate complex from the type vi secretion system
Deposited on 2018-05-15, released 2018-10-17
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 4.3 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: TssF
    Species: Escherichia coli [TaxId:562]
    Gene: EC55989_3322
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: TssF
    Species: Escherichia coli [TaxId:562]
    Gene: EC55989_3322
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: TssG
    Species: Escherichia coli [TaxId:562]
    Gene: EC55989_3321
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: TssK
    Species: Escherichia coli [TaxId:562]
    Gene: EC55989_3338
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7LG64 (0-End)
      • conflict (193)
      • conflict (201)
  • Chain 'E':
    Compound: TssK
    Species: Escherichia coli [TaxId:562]
    Gene: EC55989_3338
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7LG64 (0-End)
      • conflict (193)
      • conflict (201)
  • Chain 'F':
    Compound: TssK
    Species: Escherichia coli [TaxId:562]
    Gene: EC55989_3338
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7LG64 (0-End)
      • conflict (193)
      • conflict (201)
  • Chain 'G':
    Compound: TssK
    Species: Escherichia coli [TaxId:562]
    Gene: EC55989_3338
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7LG64 (0-443)
      • conflict (193)
      • conflict (201)
  • Chain 'H':
    Compound: TssK
    Species: Escherichia coli [TaxId:562]
    Gene: EC55989_3338
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7LG64 (0-443)
      • conflict (193)
      • conflict (201)
  • Chain 'I':
    Compound: TssK
    Species: Escherichia coli [TaxId:562]
    Gene: EC55989_3338
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7LG64 (0-End)
      • conflict (193)
      • conflict (201)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6giyA (A:)
mddltlryfdaemrylreagkafaqahpdraamldldkagtpdpcverlfegfafsmgrl
rqkidddlpelteslvsmlwphylrtipslsvvaltprlsvmkmaetvpaglevtsrpvg
pgntvcryrttraiplnplavekvvmttepdgrsvlkigfacseladwsqvdlhrlslyl
aaeapvsstlhlmmtkrlaalylrlpgnderiridgwfspggfaeedrlwpkgdsafsgy
qllleyftfrekfmfvhlnglenvslpagisgfdlevvlsqpwpadlpvtddalclhcvp
vinlftleadpliingleseyllrpkrlqdgyteiysvdavtgsgrtgsaeyvpftsfrh
rggmlrhdaperyyhtrvkrgvtgmydtwlilggqrweadrmperetlslritgtngqlp
rralqstlldrceqvlqapvsvrnlckptlpvypptedrfhwrvmshlgtgflnmlssae
vlrgtlalynwrddelnhrrldailavqhhriqrfekgfllrgldvevtldgngfagegd
ihlfgemlnrflalyadmnqfnqltlivqpegkcirwkenhnprlpg

    Sequence, based on observed residues (ATOM records):
    >6giyA (A:)
ltlryfdaemrylreagkafaqahpdraamldldkagtpdpcverlfegfafsmgrlrqk
idddlpelteslvsmlwphylrtipslsvvaltprlsvmkmaetvpaglevtsrpvgpgn
tvcryrttraiplnplavekvvmttepdgrsvlkigfacseladwsqvdlhrlslylaae
apvsstlhlmmtkrlaalylrlpgnderiridgwfspggfaeedrlwpkgdsafsgyqll
leyftfrekfmfvhlnglenvslpagisgfdlevvlsqpwpadlpvtddalclhcvpvin
lftleadpliingleseyllrpkrlqdgyteiysvdavtgsgrtgsaeyvpftsfrhrgg
mlrhdaperyyhtrvkrgvtgmydtwlilggqrweadrmperetlslritgtngqlprra
lqstlldrceqvlqapvsvrnlckptlpvypptedrfhwrvmshlgtgflnmlssaevlr
gtlalynwrddelnhrrldailavqhhriqrfekgfllrgldvevtldgngfagegdihl
fgemlnrflalyadmnqfnqltlivqpegkcirwkenhnprlpg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6giyB (B:)
mddltlryfdaemrylreagkafaqahpdraamldldkagtpdpcverlfegfafsmgrl
rqkidddlpelteslvsmlwphylrtipslsvvaltprlsvmkmaetvpaglevtsrpvg
pgntvcryrttraiplnplavekvvmttepdgrsvlkigfacseladwsqvdlhrlslyl
aaeapvsstlhlmmtkrlaalylrlpgnderiridgwfspggfaeedrlwpkgdsafsgy
qllleyftfrekfmfvhlnglenvslpagisgfdlevvlsqpwpadlpvtddalclhcvp
vinlftleadpliingleseyllrpkrlqdgyteiysvdavtgsgrtgsaeyvpftsfrh
rggmlrhdaperyyhtrvkrgvtgmydtwlilggqrweadrmperetlslritgtngqlp
rralqstlldrceqvlqapvsvrnlckptlpvypptedrfhwrvmshlgtgflnmlssae
vlrgtlalynwrddelnhrrldailavqhhriqrfekgfllrgldvevtldgngfagegd
ihlfgemlnrflalyadmnqfnqltlivqpegkcirwkenhnprlpg

    Sequence, based on observed residues (ATOM records):
    >6giyB (B:)
ltlryfdaemrylreagkafaqahpdraamldldkagtpdpcverlfegfafsmgrlrqk
idddlpelteslvsmlwphylrtipslsvvaltprlsvmkmaetvpaglevtsrpvgpgn
tvcryrttraiplnplavekvvmttepdgrsvlkigfacseladwsqvdlhrlslylaae
apvsstlhlmmtkrlaalylrlpgnderiridgwfspggfaeedrlwpkgdsafsgyqll
leyftfrekfmfvhlnglenvslpagisgfdlevvlsqpwpadlpvtddalclhcvpvin
lftleadpliingleseyllrpkrlqdgyteiysvdavtgsgrtgsaeyvpftsfrhrgg
mlrhdaperyyhtrvkrgvtgmydtwlilggqrweadrmperetlslritgtngqlprra
lqstlldrceqvlqapvsvrnlckptlpvypptedrfhwrvmshlgtgflnmlssaevlr
gtlalynwrddelnhrrldailavqhhriqrfekgfllrgldvevtldgngfagegdihl
fgemlnrflalyadmnqfnqltlivqpegkcirwkenhnprlp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6giyC (C:)
mhpverksqsaparlitryrkqlpyinfyrfcqlleqsqpdqppigsgwqarqeavrfcp
ypgmgfpaseikdavipeeshlppivhvtfmglygvtsplpahyisdiaqqregheaaad
fldifshrlitqyyriwrkysypatfeaggqdktsqyllglarlgipgcaqniatpvsrf
lallplmllpgrtaegltslvtllapgtqarvwhhdrrriplktpltmrvhhpvslksrp
vmgdhatdvngqvllqlstqtgsevqgwlpgghlysdllallhvylgsrldvrlqlcver
sllpdarlscrpaagspqlgrtavmrtqakiatsaarvmtislgryqrvqehyqrketqe
ngdyrw

    Sequence, based on observed residues (ATOM records):
    >6giyC (C:)
sqsaparlitryrkqlpyinfyrfcqlleqsqpdqppigsgwqarqeavrfcpypgmgfp
aseikdavipeeshlppivhvtfmglygvtsplpahyisdiaqqregheaaadfldifsh
rlitqyyriwrkysypatfeaggqdktsqyllglarlgipgcaqniatpvsrflallplm
llpgrtaegltslvtllapgtqarvwhhdrrriplktpltmrvhhpvslksrpvmgdhat
dvngqvllqlstqtgsevqgwlpgghlysdllallhvylgsrldvrlqlcversllpdar
lscrpaagspqlgrtavmrtqakiatsaarvmtislgryqrvqehyqrke

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6giyD (D:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlleaslpsrvvfielkqkgvmwegalhdarlregadfwlsvrssmpghelqt
kfpqlckagspddvsevvnvalsgviirpvthvpaaiplrlenqyfaldlstdaaramld
agrctfytpaslgdvklelfavlr

    Sequence, based on observed residues (ATOM records):
    >6giyD (D:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlle

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6giyE (E:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlleaslpsrvvfielkqkgvmwegalhdarlregadfwlsvrssmpghelqt
kfpqlckagspddvsevvnvalsgviirpvthvpaaiplrlenqyfaldlstdaaramld
agrctfytpaslgdvklelfavlr

    Sequence, based on observed residues (ATOM records):
    >6giyE (E:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlle

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6giyF (F:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlleaslpsrvvfielkqkgvmwegalhdarlregadfwlsvrssmpghelqt
kfpqlckagspddvsevvnvalsgviirpvthvpaaiplrlenqyfaldlstdaaramld
agrctfytpaslgdvklelfavlr

    Sequence, based on observed residues (ATOM records):
    >6giyF (F:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlle

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6giyG (G:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlleaslpsrvvfielkqkgvmwegalhdarlregadfwlsvrssmpghelqt
kfpqlckagspddvsevvnvalsgviirpvthvpaaiplrlenqyfaldlstdaaramld
agrctfytpaslgdvklelfavlr

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6giyH (H:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlleaslpsrvvfielkqkgvmwegalhdarlregadfwlsvrssmpghelqt
kfpqlckagspddvsevvnvalsgviirpvthvpaaiplrlenqyfaldlstdaaramld
agrctfytpaslgdvklelfavlr

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6giyI (I:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlleaslpsrvvfielkqkgvmwegalhdarlregadfwlsvrssmpghelqt
kfpqlckagspddvsevvnvalsgviirpvthvpaaiplrlenqyfaldlstdaaramld
agrctfytpaslgdvklelfavlr

    Sequence, based on observed residues (ATOM records):
    >6giyI (I:)
mkiyrplwedgaflmpqqfqqqaawdvhladsvarmglahpwgvvaaefddsllplsrln
atrlivrfpdgtlidteradnlppvcdlstvsdrslvdivlalpllnanggnldngsese
rprrwkservnvqelagheqsevavlrhnltlrmahqenaawltcpvtrlvrdaqgqwcr
dprfipplltlsaspslmtellellhhlqarrqrlmsmrrennarladfavadvslfwll
nalnsaepvlkelldmpyrhpellyrelarlagslltfslehnvdavpayhhetpenvfp
pllsllnrlle