PDB entry 6gio

View 6gio on RCSB PDB site
Description: Structure of Amino Acid Amide Racemase from Ochrobactrum anthropi
Class: isomerase
Keywords: PLP, isomerase, amino acid, amino acid amide, amino acid ester, racemase
Deposited on 2018-05-14, released 2019-03-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-03-27, with a file datestamp of 2019-03-22.
Experiment type: XRAY
Resolution: 1.87 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Amino acid amide racemase
    Species: Ochrobactrum anthropi [TaxId:529]
    Gene: aaarA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6gioa_
  • Chain 'B':
    Compound: Amino acid amide racemase
    Species: Ochrobactrum anthropi [TaxId:529]
    Gene: aaarA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6giob_
  • Chain 'C':
    Compound: Amino acid amide racemase
    Species: Ochrobactrum anthropi [TaxId:529]
    Gene: aaarA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6gioc_
  • Chain 'D':
    Compound: Amino acid amide racemase
    Species: Ochrobactrum anthropi [TaxId:529]
    Gene: aaarA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6giod_
  • Heterogens: PLP, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6gioA (A:)
mqtplslrerdarviaeigrlrfsplsliggkgnrlieeggrsildlsgsagpaalgygh
paiveaveksvrdmagaslllypneaavslaedllritpgngerrvwfghsgsdandcav
rvltaatkrsriisfigsyhgnltgsmgisghtamthtlprpgvlllpypdpfrprfsae
avlelldyhfatscppeqvaavfiepilsdgglvvpppaflealqdrcrkhgilvvvdev
kvglgrtglmhcfqheglepdmvvfgkglggglplsavvgpqwvmdhapafvlqttagnp
vataagravlntierqglaqrservggifadrlrrlsdkhsiigdvrgrglaigvdlvsd
rgsrepapvtttakiiyrgyqlgaaftyvglnanvlefmppltltepeideaadivdqai
gdvldgkvadsdvahfmmw

    Sequence, based on observed residues (ATOM records): (download) 
    >6gioA (A:)
lslrerdarviaeigrlrfsplsliggkgnrlieeggrsildlsgsagpaalgyghpaiv
eaveksvrdmagaslllypneaavslaedllritpgngerrvwfghsgsdandcavrvlt
aatkrsriisfigsyhgnltgsmgisghtamthtlprpgvlllpypdpfrprfsaeavle
lldyhfatscppeqvaavfiepilsdgglvvpppaflealqdrcrkhgilvvvdevkvgl
grtglmhcfqheglepdmvvfgkglggglplsavvgpqwvmdhapafvlqttagnpvata
agravlntierqglaqrservggifadrlrrlsdkhsiigdvrgrglaigvdlvsdrgsr
epapvtttakiiyrgyqlgaaftyvglnanvlefmppltltepeideaadivdqaigdvl
dgkvadsdvahfm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6gioB (B:)
mqtplslrerdarviaeigrlrfsplsliggkgnrlieeggrsildlsgsagpaalgygh
paiveaveksvrdmagaslllypneaavslaedllritpgngerrvwfghsgsdandcav
rvltaatkrsriisfigsyhgnltgsmgisghtamthtlprpgvlllpypdpfrprfsae
avlelldyhfatscppeqvaavfiepilsdgglvvpppaflealqdrcrkhgilvvvdev
kvglgrtglmhcfqheglepdmvvfgkglggglplsavvgpqwvmdhapafvlqttagnp
vataagravlntierqglaqrservggifadrlrrlsdkhsiigdvrgrglaigvdlvsd
rgsrepapvtttakiiyrgyqlgaaftyvglnanvlefmppltltepeideaadivdqai
gdvldgkvadsdvahfmmw

    Sequence, based on observed residues (ATOM records): (download) 
    >6gioB (B:)
tplslrerdarviaeigrlrfsplsliggkgnrlieeggrsildlsgsagpaalgyghpa
iveaveksvrdmagaslllypneaavslaedllritpgngerrvwfghsgsdandcavrv
ltaatkrsriisfigsyhgnltgsmgisghtamthtlprpgvlllpypdpfrprfsaeav
lelldyhfatscppeqvaavfiepilsdgglvvpppaflealqdrcrkhgilvvvdevkv
glgrtglmhcfqheglepdmvvfgkglggglplsavvgpqwvmdhapafvlqttagnpva
taagravlntierqglaqrservggifadrlrrlsdkhsiigdvrgrglaigvdlvsdrg
srepapvtttakiiyrgyqlgaaftyvglnanvlefmppltltepeideaadivdqaigd
vldgkvadsdvahfm

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6gioC (C:)
mqtplslrerdarviaeigrlrfsplsliggkgnrlieeggrsildlsgsagpaalgygh
paiveaveksvrdmagaslllypneaavslaedllritpgngerrvwfghsgsdandcav
rvltaatkrsriisfigsyhgnltgsmgisghtamthtlprpgvlllpypdpfrprfsae
avlelldyhfatscppeqvaavfiepilsdgglvvpppaflealqdrcrkhgilvvvdev
kvglgrtglmhcfqheglepdmvvfgkglggglplsavvgpqwvmdhapafvlqttagnp
vataagravlntierqglaqrservggifadrlrrlsdkhsiigdvrgrglaigvdlvsd
rgsrepapvtttakiiyrgyqlgaaftyvglnanvlefmppltltepeideaadivdqai
gdvldgkvadsdvahfmmw

    Sequence, based on observed residues (ATOM records): (download) 
    >6gioC (C:)
qtplslrerdarviaeigrlrfsplsliggkgnrlieeggrsildlsgsagpaalgyghp
aiveaveksvrdmagaslllypneaavslaedllritpgngerrvwfghsgsdandcavr
vltaatkrsriisfigsyhgnltgsmgisghtamthtlprpgvlllpypdpfrprfsaea
vlelldyhfatscppeqvaavfiepilsdgglvvpppaflealqdrcrkhgilvvvdevk
vglgrtglmhcfqheglepdmvvfgkglggglplsavvgpqwvmdhapafvlqttagnpv
ataagravlntierqglaqrservggifadrlrrlsdkhsiigdvrgrglaigvdlvsdr
gsrepapvtttakiiyrgyqlgaaftyvglnanvlefmppltltepeideaadivdqaig
dvldgkvadsdvahfm

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6gioD (D:)
mqtplslrerdarviaeigrlrfsplsliggkgnrlieeggrsildlsgsagpaalgygh
paiveaveksvrdmagaslllypneaavslaedllritpgngerrvwfghsgsdandcav
rvltaatkrsriisfigsyhgnltgsmgisghtamthtlprpgvlllpypdpfrprfsae
avlelldyhfatscppeqvaavfiepilsdgglvvpppaflealqdrcrkhgilvvvdev
kvglgrtglmhcfqheglepdmvvfgkglggglplsavvgpqwvmdhapafvlqttagnp
vataagravlntierqglaqrservggifadrlrrlsdkhsiigdvrgrglaigvdlvsd
rgsrepapvtttakiiyrgyqlgaaftyvglnanvlefmppltltepeideaadivdqai
gdvldgkvadsdvahfmmw

    Sequence, based on observed residues (ATOM records): (download) 
    >6gioD (D:)
lslrerdarviaeigrlrfsplsliggkgnrlieeggrsildlsgsagpaalgyghpaiv
eaveksvrdmagaslllypneaavslaedllritpgngerrvwfghsgsdandcavrvlt
aatkrsriisfigsyhgnltgsmgisghtamthtlprpgvlllpypdpfrprfsaeavle
lldyhfatscppeqvaavfiepilsdgglvvpppaflealqdrcrkhgilvvvdevkvgl
grtglmhcfqheglepdmvvfgkglggglplsavvgpqwvmdhapafvlqttagnpvata
agravlntierqglaqrservggifadrlrrlsdkhsiigdvrgrglaigvdlvsdrgsr
epapvtttakiiyrgyqlgaaftyvglnanvlefmppltltepeideaadivdqaigdvl
dgkvadsdvahfmm