PDB entry 6ghn

View 6ghn on RCSB PDB site
Description: hla-e*01:03 in complex with the mtb44 peptide variant: mtb44*p9-phe.
Deposited on 2018-05-08, released 2018-08-08
The last revision was dated 2018-08-22, with a file datestamp of 2018-08-17.
Experiment type: XRAY
Resolution: 2.54 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class I histocompatibility antigen, E alpha chain variant
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • initiating methionine (0)
  • Chain 'C':
    Compound: HLA class I histocompatibility antigen, E alpha chain variant
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • initiating methionine (0)
  • Chain 'P':
    Compound: arg-leu-pro-ala-lys-ala-pro-leu-phe
    Species: Mycobacteriaceae, synthetic [TaxId:1762]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GHN (0-8)
  • Chain 'Q':
    Compound: arg-leu-pro-ala-lys-ala-pro-leu-phe
    Species: Mycobacteriaceae, synthetic [TaxId:1762]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GHN (0-8)
  • Heterogens: SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ghnA (A:)
gshslkyfhtsvsrpgrgeprfisvgyvddtqfvrfdndaasprmvprapwmeqegseyw
dretrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydg
kdyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketll
hleppkthvthhpisdheatlrcwalgfypaeitltwqqdgeghtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpepvtlrw

    Sequence, based on observed residues (ATOM records):
    >6ghnA (A:)
gshslkyfhtsvsrpgrgeprfisvgyvddtqfvrfdndaasprmvprapwmeqegseyw
dretrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydg
kdyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketll
hleppkthvthhpisdheatlrcwalgfypaeitltwqqdqdtelvetrpagdgtfqkwa
avvvpsgeeqrytchvqheglpepvtlrw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6ghnB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ghnC (C:)
gshslkyfhtsvsrpgrgeprfisvgyvddtqfvrfdndaasprmvprapwmeqegseyw
dretrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydg
kdyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketll
hleppkthvthhpisdheatlrcwalgfypaeitltwqqdgeghtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpepvtlrw

    Sequence, based on observed residues (ATOM records):
    >6ghnC (C:)
gshslkyfhtsvsrpgrgeprfisvgyvddtqfvrfdndaasprmvprapwmeqegseyw
dretrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydg
kdyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketll
hleppkthvthhpisdheatlrcwalgfypaeitltwqqdghtqdtelvetrpagdgtfq
kwaavvvpsgeeqrytchvqheglpepvtlrw

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6ghnD (D:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >6ghnP (P:)
rlpakaplf

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >6ghnQ (Q:)
rlpakaplf