PDB entry 6gh8

View 6gh8 on RCSB PDB site
Description: crystal structure of gp1 domain of lujo virus in complex with the first cub domain of neuropilin-2
Deposited on 2018-05-06, released 2018-07-25
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.44 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Neuropilin-2
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP2, VEGF165R2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O60462 (5-End)
      • expression tag (2-4)
      • conflict (101)
  • Chain 'B':
    Compound: Glycoprotein
    Species: Lujo mammarenavirus [TaxId:649188]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Neuropilin-2
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP2, VEGF165R2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O60462 (5-End)
      • expression tag (2-4)
      • conflict (101)
  • Chain 'D':
    Compound: Glycoprotein
    Species: Lujo mammarenavirus [TaxId:649188]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CA, NAG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gh8A (A:)
adlgspcggrlnskdagyitspgypqdypshqncewivyapepnqkivlnfnphfeiekh
dckydfieirdgdsesadllgkhcgniapptiissgsmlyirftsdyarqgagfslryei
fktgsgthhhhhh

    Sequence, based on observed residues (ATOM records):
    >6gh8A (A:)
lgspcggrlnskdagyitspgypqdypshqncewivyapepnqkivlnfnphfeiekhdc
kydfieirdgdsesadllgkhcgniapptiissgsmlyirftsdyarqgagfslryeifk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gh8B (B:)
adlgshhhhhhggmsllssipmvseqqhciqhnhssitfslltnksdlekcnftrlqavd
rvifdlfrefhhrvgdfpvtsdlkcshntsyrvieyevtkeslprlqeavstlfpdlhls
edrflqiqahddknctglh

    Sequence, based on observed residues (ATOM records):
    >6gh8B (B:)
qhciqhnhssitfslltnksdlekcnftrlqavdrvifdlfrefhhrvgdfpvtsdlkcs
hntsyrvieyevtkeslprlqeavstlfpdlhlsedrflqiqahddknct

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gh8C (C:)
adlgspcggrlnskdagyitspgypqdypshqncewivyapepnqkivlnfnphfeiekh
dckydfieirdgdsesadllgkhcgniapptiissgsmlyirftsdyarqgagfslryei
fktgsgthhhhhh

    Sequence, based on observed residues (ATOM records):
    >6gh8C (C:)
lgspcggrlnskdagyitspgypqdypshqncewivyapepnqkivlnfnphfeiekhdc
kydfieirdgdsesadllgkhcgniapptiissgsmlyirftsdyarqgagfslryeifk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6gh8D (D:)
adlgshhhhhhggmsllssipmvseqqhciqhnhssitfslltnksdlekcnftrlqavd
rvifdlfrefhhrvgdfpvtsdlkcshntsyrvieyevtkeslprlqeavstlfpdlhls
edrflqiqahddknctglh

    Sequence, based on observed residues (ATOM records):
    >6gh8D (D:)
qhciqhnhssitfslltnksdlekcnftrlqavdrvifdlfrefhhrvgdfpvtsdlkcs
hntsyrvieyevtkeslprlqeavstlfpdlhlsedrflqiqahddknct