PDB entry 6gh4

View 6gh4 on RCSB PDB site
Description: hla-e*01:03 in complex with the mtb44 peptide variant: mtb44*p2-gln.
Deposited on 2018-05-04, released 2018-08-08
The last revision was dated 2018-08-22, with a file datestamp of 2018-08-17.
Experiment type: XRAY
Resolution: 2.16 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC class I antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-E
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • initiating methionine (0)
  • Chain 'C':
    Compound: MHC class I antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-E
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • initiating methionine (0)
  • Chain 'E':
    Compound: MHC class I antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-E
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • initiating methionine (0)
  • Chain 'G':
    Compound: MHC class I antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-E
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • initiating methionine (0)
  • Chain 'P':
    Compound: arg-gln-pro-ala-lys-ala-pro-leu-leu
    Species: Mycobacteriaceae, synthetic [TaxId:1762]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GH4 (0-8)
  • Chain 'Q':
    Compound: arg-gln-pro-ala-lys-ala-pro-leu-leu
    Species: Mycobacteriaceae, synthetic [TaxId:1762]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GH4 (0-8)
  • Chain 'R':
    Compound: arg-gln-pro-ala-lys-ala-pro-leu-leu
    Species: Mycobacteriaceae, synthetic [TaxId:1762]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GH4 (0-8)
  • Chain 'Y':
    Compound: arg-gln-pro-ala-lys-ala-pro-leu-leu
    Species: Mycobacteriaceae, synthetic [TaxId:1762]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GH4 (0-8)
  • Heterogens: SO4, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6gh4A (A:)
gshslkyfhtsvsrpgrgeprfisvgyvddtqfvrfdndaasprmvprapwmeqegseyw
dretrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydg
kdyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketll
hleppkthvthhpisdheatlrcwalgfypaeitltwqqdgeghtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpepvtlrw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6gh4B (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6gh4C (C:)
gshslkyfhtsvsrpgrgeprfisvgyvddtqfvrfdndaasprmvprapwmeqegseyw
dretrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydg
kdyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketll
hleppkthvthhpisdheatlrcwalgfypaeitltwqqdgeghtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpepvtlrw

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6gh4D (D:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6gh4E (E:)
gshslkyfhtsvsrpgrgeprfisvgyvddtqfvrfdndaasprmvprapwmeqegseyw
dretrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydg
kdyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketll
hleppkthvthhpisdheatlrcwalgfypaeitltwqqdgeghtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpepvtlrw

    Sequence, based on observed residues (ATOM records):
    >6gh4E (E:)
gshslkyfhtsvsrpgrgeprfisvgyvddtqfvrfdndaasprmvprapwmeqegseyw
dretrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydg
kdyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketll
hleppkthvthhpisdheatlrcwalgfypaeitltwqqdgeghtqtelvetrpagdgtf
qkwaavvvpsgeeqrytchvqheglpepvtlrw

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6gh4F (F:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6gh4G (G:)
gshslkyfhtsvsrpgrgeprfisvgyvddtqfvrfdndaasprmvprapwmeqegseyw
dretrsardtaqifrvnlrtlrgyynqseagshtlqwmhgcelgpdgrflrgyeqfaydg
kdyltlnedlrswtavdtaaqiseqksndaseaehqrayledtcvewlhkylekgketll
hleppkthvthhpisdheatlrcwalgfypaeitltwqqdgeghtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpepvtlrw

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6gh4H (H:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >6gh4P (P:)
rqpakapll

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >6gh4Q (Q:)
rqpakapll

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records:
    >6gh4R (R:)
rqpakapll

  • Chain 'Y':
    Sequence; same for both SEQRES and ATOM records:
    >6gh4Y (Y:)
rqpakapll