PDB entry 6gh3

View 6gh3 on RCSB PDB site
Description: paenibacillus sp. ym1 laminaribiose phosphorylase with alpha-man-1- phosphate bound
Deposited on 2018-05-04, released 2018-06-13
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.82 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Laminaribiose phosphorylase
    Species: Paenibacillus sp. YM1 [TaxId:856729]
    Gene: lbpA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Laminaribiose phosphorylase
    Species: Paenibacillus sp. YM1 [TaxId:856729]
    Gene: lbpA
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, M1P, EDO, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gh3A (A:)
gpmgqkgwkfqgeqgefrleqpehnsylyfplvneagmmsavtpnlhgeitsghntflme
pvsaeslhnskasrnfwvfiegygawsvsgnsarqnaarftgeeersaveagflwhavtr
enekaglkartvsfvpvtddkielmrvtltntgnaplkltptaaiplygrsaddlrdhrh
vtsllhriftseygievqpalsfderghrvnkvtygvfgaeaggtapagffpvtedfige
ggaldwpeavvanrepdaqagtavegyeavgalrfapvelapgksvsyvvamvisgdrid
vgryaadylaagrfdalleqnraywrdkldtvrfssgdgeqdlwmkwvtlqpilrrlygn
sflpyhdygrggrgwrdlwqdclalmvmepaevrhlllnnyagvrmdgsnatiigagpge
fvadrnniprvwmdhgawplmttllylhqsgdldllfqpqsyfrdvfvkrcrerdaswtp
eqgnklltadgqiyegtilehillqnivpffnvgehgniklegadwndgldlapergesv
aftafyasnlmelselllelqkrtgkdsldiaeemallldtlgkpisydsiqekrslldr
yydavtprvsgkkllldirkvaedlkrkadwavahlrgsewiqskegyawfngyynndge
rvegdhpdgvrmtltgqvfaimggvatdeqtekisqavnrylkderigyrlnsrfggiqq
nlgrafgfafghkengamfshmtvmyanalykrgfvqegfevldsiyrlsadfensriyp
gvpeyinergrgmytyltgsaswllltqltevygvkgrfgdlrlepklvqaqfdgsgeaa
vetlfagrmlrvvyrnpqaaehgqyrvdsvslngqsvdcqndgagcligrsliealpadg
vhelivtlgrnis

    Sequence, based on observed residues (ATOM records):
    >6gh3A (A:)
kgwkfqgeqgefrleqpehnsylyfplvneagmmsavtpnlhgeitsghntflmepvsae
slhnskasrnfwvfiegygawsvsgnsarqnaarftgeeersaveagflwhavtreneka
glkartvsfvpvtddkielmrvtltntgnaplkltptaaiplygrsaddlrdhrhvtsll
hriftseygievqpalsfderghrvnkvtygvfgaeaggtapagffpvtedfigeggald
wpeavvanrepdaqagtavegyeavgalrfapvelapgksvsyvvamvisgdridvgrya
adylaagrfdalleqnraywrdkldtvrfssgdgeqdlwmkwvtlqpilrrlygnsflpy
hdygrggrgwrdlwqdclalmvmepaevrhlllnnyagvrmdgsnatiigagpgefvadr
nniprvwmdhgawplmttllylhqsgdldllfqpqsyfrdvfvkrcrerdaswtpeqgnk
lltadgqiyegtilehillqnivpffnvgehgniklegadwndgldlapergesvaftaf
yasnlmelselllelqkrtgkdsldiaeemallldtlgkpisydsiqekrslldryydav
tprvsgkkllldirkvaedlkrkadwavahlrgsewiqskegyawfngyynndgervegd
hpdgvrmtltgqvfaimggvatdeqtekisqavnrylkderigyrlnsrfggiqqnlgra
fgfafghkengamfshmtvmyanalykrgfvqegfevldsiyrlsadfensriypgvpey
inergrgmytyltgsaswllltqltevygvkgrfgdlrlepklvqaqfdgsgeaavetlf
agrmlrvvyrnpqaaehgqyrvdsvslngqsvdccligrsliealpadgvhelivtlgrn
is

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gh3B (B:)
gpmgqkgwkfqgeqgefrleqpehnsylyfplvneagmmsavtpnlhgeitsghntflme
pvsaeslhnskasrnfwvfiegygawsvsgnsarqnaarftgeeersaveagflwhavtr
enekaglkartvsfvpvtddkielmrvtltntgnaplkltptaaiplygrsaddlrdhrh
vtsllhriftseygievqpalsfderghrvnkvtygvfgaeaggtapagffpvtedfige
ggaldwpeavvanrepdaqagtavegyeavgalrfapvelapgksvsyvvamvisgdrid
vgryaadylaagrfdalleqnraywrdkldtvrfssgdgeqdlwmkwvtlqpilrrlygn
sflpyhdygrggrgwrdlwqdclalmvmepaevrhlllnnyagvrmdgsnatiigagpge
fvadrnniprvwmdhgawplmttllylhqsgdldllfqpqsyfrdvfvkrcrerdaswtp
eqgnklltadgqiyegtilehillqnivpffnvgehgniklegadwndgldlapergesv
aftafyasnlmelselllelqkrtgkdsldiaeemallldtlgkpisydsiqekrslldr
yydavtprvsgkkllldirkvaedlkrkadwavahlrgsewiqskegyawfngyynndge
rvegdhpdgvrmtltgqvfaimggvatdeqtekisqavnrylkderigyrlnsrfggiqq
nlgrafgfafghkengamfshmtvmyanalykrgfvqegfevldsiyrlsadfensriyp
gvpeyinergrgmytyltgsaswllltqltevygvkgrfgdlrlepklvqaqfdgsgeaa
vetlfagrmlrvvyrnpqaaehgqyrvdsvslngqsvdcqndgagcligrsliealpadg
vhelivtlgrnis

    Sequence, based on observed residues (ATOM records):
    >6gh3B (B:)
kgwkfqgeqgefrleqpehnsylyfplvneagmmsavtpnlhgeitsghntflmepvsae
slhnskasrnfwvfiegygawsvsgnsarqnaarftgeeersaveagflwhavtreneka
glkartvsfvpvtddkielmrvtltntgnaplkltptaaiplygrsaddlrdhrhvtsll
hriftseygievqpalsfderghrvnkvtygvfgaeaggtapagffpvtedfigeggald
wpeavvanrepdaqagtavegyeavgalrfapvelapgksvsyvvamvisgdridvgrya
adylaagrfdalleqnraywrdkldtvrfssgdgeqdlwmkwvtlqpilrrlygnsflpy
hdygrggrgwrdlwqdclalmvmepaevrhlllnnyagvrmdgsnatiigagpgefvadr
prvwmdhgawplmttllylhqsgdldllfqpqsyfrdvfvkrcrerdaswtpeqgnkllt
adgqiyegtilehillqnivpffnvgehgniklegadwndgldlapergesvaftafyas
nlmelselllelqkrtgkdsldiaeemallldtlgkpisydsiqekrslldryydavtpr
vsgkkllldirkvaedlkrkadwavahlrgsewiqskegyawfngyynndgervegdhpd
gvrmtltgqvfaimggvatdeqtekisqavnrylkderigyrlnsrfggiqqnlgrafgf
afghkengamfshmtvmyanalykrgfvqegfevldsiyrlsadfensriypgvpeyine
rgrgmytyltgsaswllltqltevygvkgrfgdlrlepklvqaqfdgsgeaavetlfagr
mlrvvyrnpqaaehgqyrvdsvslngqsvdcqagcligrsliealpadgvhelivtlgr