PDB entry 6gfo

View 6gfo on RCSB PDB site
Description: cyanobacterial gapdh with full-length cp12
Deposited on 2018-05-01, released 2019-05-08
The last revision was dated 2019-11-20, with a file datestamp of 2019-11-15.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Gene: tll1466
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8DIW5 (2-338)
      • expression tag (1)
  • Chain 'B':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Gene: tll1466
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8DIW5 (2-338)
      • expression tag (1)
  • Chain 'C':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Gene: tll1466
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8DIW5 (2-338)
      • expression tag (1)
  • Chain 'D':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Gene: tll1466
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8DIW5 (2-338)
      • expression tag (1)
  • Chain 'E':
    Compound: cp12 polypeptide
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Gene: cp12
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: cp12 polypeptide
    Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
    Gene: cp12
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAD, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gfoA (A:)
gsmvrvaingfgrigrnfmrcwlqrkanskleivgindtsdprtnahllkydsmlgifqd
aeitadddciyagghavkcvsdrnpenlpwsawgidlvieatgvftsregaskhlsagak
kvlitapgkgniptyvvgvnhhtydpsedivsnascttnclapivkvlheafgiqqgmmt
tthsytgdqrlldashrdlrraraaamnivptstgaakavglvipelqgklngialrvpt
pnvsvvdfvaqvekptiaeqvnqvikeasettmkgiihyselelvssdyrghnassilda
sltmvlggnlvkvvawydnewgysqrvldlaehmaahwa

    Sequence, based on observed residues (ATOM records):
    >6gfoA (A:)
smvrvaingfgrigrnfmrcwlqrkanskleivgindtsdprtnahllkydsmlgifqda
eitadddciyagghavkcvsdrnpenlpwsawgidlvieatgvftsregaskhlsagakk
vlitapgkgniptyvvgvnhhtydpsedivsnascttnclapivkvlheafgiqqgmmtt
thsytgdqrlldashrdlrraraaamnivptstgaakavglvipelqgklngialrvptp
nvsvvdfvaqvekptiaeqvnqvikeasettmkgiihyselelvssdyrghnassildas
ltmvlggnlvkvvawydnewgysqrvldlaehmaahwa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gfoB (B:)
gsmvrvaingfgrigrnfmrcwlqrkanskleivgindtsdprtnahllkydsmlgifqd
aeitadddciyagghavkcvsdrnpenlpwsawgidlvieatgvftsregaskhlsagak
kvlitapgkgniptyvvgvnhhtydpsedivsnascttnclapivkvlheafgiqqgmmt
tthsytgdqrlldashrdlrraraaamnivptstgaakavglvipelqgklngialrvpt
pnvsvvdfvaqvekptiaeqvnqvikeasettmkgiihyselelvssdyrghnassilda
sltmvlggnlvkvvawydnewgysqrvldlaehmaahwa

    Sequence, based on observed residues (ATOM records):
    >6gfoB (B:)
smvrvaingfgrigrnfmrcwlqrkanskleivgindtsdprtnahllkydsmlgifqda
eitadddciyagghavkcvsdrnpenlpwsawgidlvieatgvftsregaskhlsagakk
vlitapgkgniptyvvgvnhhtydpsedivsnascttnclapivkvlheafgiqqgmmtt
thsytgdqrlldashrdlrraraaamnivptstgaakavglvipelqgklngialrvptp
nvsvvdfvaqvekptiaeqvnqvikeasettmkgiihyselelvssdyrghnassildas
ltmvlggnlvkvvawydnewgysqrvldlaehmaahwa

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gfoC (C:)
gsmvrvaingfgrigrnfmrcwlqrkanskleivgindtsdprtnahllkydsmlgifqd
aeitadddciyagghavkcvsdrnpenlpwsawgidlvieatgvftsregaskhlsagak
kvlitapgkgniptyvvgvnhhtydpsedivsnascttnclapivkvlheafgiqqgmmt
tthsytgdqrlldashrdlrraraaamnivptstgaakavglvipelqgklngialrvpt
pnvsvvdfvaqvekptiaeqvnqvikeasettmkgiihyselelvssdyrghnassilda
sltmvlggnlvkvvawydnewgysqrvldlaehmaahwa

    Sequence, based on observed residues (ATOM records):
    >6gfoC (C:)
smvrvaingfgrigrnfmrcwlqrkanskleivgindtsdprtnahllkydsmlgifqda
eitadddciyagghavkcvsdrnpenlpwsawgidlvieatgvftsregaskhlsagakk
vlitapgkgniptyvvgvnhhtydpsedivsnascttnclapivkvlheafgiqqgmmtt
thsytgdqrlldashrdlrraraaamnivptstgaakavglvipelqgklngialrvptp
nvsvvdfvaqvekptiaeqvnqvikeasettmkgiihyselelvssdyrghnassildas
ltmvlggnlvkvvawydnewgysqrvldlaehmaahwa

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6gfoD (D:)
gsmvrvaingfgrigrnfmrcwlqrkanskleivgindtsdprtnahllkydsmlgifqd
aeitadddciyagghavkcvsdrnpenlpwsawgidlvieatgvftsregaskhlsagak
kvlitapgkgniptyvvgvnhhtydpsedivsnascttnclapivkvlheafgiqqgmmt
tthsytgdqrlldashrdlrraraaamnivptstgaakavglvipelqgklngialrvpt
pnvsvvdfvaqvekptiaeqvnqvikeasettmkgiihyselelvssdyrghnassilda
sltmvlggnlvkvvawydnewgysqrvldlaehmaahwa

    Sequence, based on observed residues (ATOM records):
    >6gfoD (D:)
smvrvaingfgrigrnfmrcwlqrkanskleivgindtsdprtnahllkydsmlgifqda
eitadddciyagghavkcvsdrnpenlpwsawgidlvieatgvftsregaskhlsagakk
vlitapgkgniptyvvgvnhhtydpsedivsnascttnclapivkvlheafgiqqgmmtt
thsytgdqrlldashrdlrraraaamnivptstgaakavglvipelqgklngialrvptp
nvsvvdfvaqvekptiaeqvnqvikeasettmkgiihyselelvssdyrghnassildas
ltmvlggnlvkvvawydnewgysqrvldlaehmaahwa

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6gfoE (E:)
gsmsnlekqieqareeahkicdtegatsgqcaaawdaleelqaeaahqraeqqdhktsfq
qycddnpdaaecriydd

    Sequence, based on observed residues (ATOM records):
    >6gfoE (E:)
msnlekqieqareeahkicdtegatsgqcaaawdaleelqaeaahqraeqqdhktsfqqy
cddnpdaaecriydd

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6gfoF (F:)
gsmsnlekqieqareeahkicdtegatsgqcaaawdaleelqaeaahqraeqqdhktsfq
qycddnpdaaecriydd

    Sequence, based on observed residues (ATOM records):
    >6gfoF (F:)
snlekqieqareeahkicdtegatsgqcaaawdaleelqaeaahqhktsfqqycddnpda
aecriydd