PDB entry 6gfm

View 6gfm on RCSB PDB site
Description: Crystal structure of the Escherichia coli nucleosidase PpnN (pppGpp-form)
Class: hydrolase
Keywords: YgdH, PpnN, allosteric enzyme, nucleotide metabolism, stringent response, antibiotic tolerance, persistence, fluoroquinolone, hydrolase
Deposited on 2018-05-01, released 2019-04-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-31, with a file datestamp of 2019-07-26.
Experiment type: XRAY
Resolution: 2.77 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase
    Species: Escherichia coli [TaxId:83333]
    Gene: ppnN, ygdH, b2795, JW2766
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0ADR8 (16-End)
      • expression tag (13-15)
    Domains in SCOPe 2.08: d6gfma1, d6gfma2, d6gfma3, d6gfma4
  • Heterogens: 0O2, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6gfmA (A:)
rgshhhhhhtdpalraithisplgsmdmlsqlevdmlkrtassdlyqlfrncslavlnsg
sltdnskellsrfenfdinvlrrergvklelinppeeafvdgriiralqanlfavlrdil
fvygqihntvrfpnlnldnsvhitnlvfsilrnaralhvgeapnmvvcwgghsineneyl
yarrvgnqlglrelnictgcgpgameapmkgaavghaqqrykdsrfigmtepsiiaaepp
nplvneliimpdiekrleafvriahgiiifpggvgtaeellyllgilmnpankdqvlpli
ltgpkesadyfrvldefvvhtlgenarrhyriiiddaaevarqmkksmplvkenrrdtgd
aysfnwsmriapdlqmpfepshenmanlklypdqpvevlaadlrrafsgivagnvkevgi
raieefgpykingdkeimrrmddllqgfvaqhrmklpgsayipcyeictglcgr

    Sequence, based on observed residues (ATOM records): (download) 
    >6gfmA (A:)
lraithisplgsmdmlsqlevdmlkrtassdlyqlfrncslavlnsgsltdnskellsrf
enfdinvlrrergvklelinppeeafvdgriiralqanlfavlrdilfvygqihntvrfp
nlnldnsvhitnlvfsilrnaralhvgeapnmvvcwgghsineneylyarrvgnqlglre
lnictgcgpgameapmkgaavghaqqrykdsrfigmtepsiiaaeppnplvneliimpdi
ekrleafvriahgiiifpggvgtaeellyllgilmnpankdqvlpliltgpkesadyfrv
ldefvvhtlgenarrhyriiiddaaevarqmkksmplvkenrrdtgdaysfnwsmriapd
lqmpfepshenmanlklypdqpvevlaadlrrafsgivagnvkevgiraieefgpyking
dkeimrrmddllqgfvaqhr