SCOPe 2.08: Structural Classification of Proteins

PDB entry 6gel

View 6gel on RCSB PDB site
Description: the structure of twitch-2b
Deposited on 2018-04-26, released 2019-08-21
The last revision was dated 2019-09-11, with a file datestamp of 2019-09-06.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Green fluorescent protein,Optimized Ratiometric Calcium Sensor,Green fluorescent protein,Green fluorescent protein
Species: Aequorea victoria [TaxId:6100]
Gene: GFP
Database cross-references and differences (RAF-indexed):
- Uniprot P42212 (Start-227)
  - conflict (64)
  - chromophore (65)
  - conflict (72)
  - conflict (145-148)
  - conflict (153)
  - conflict (163)
  - conflict (166-169)
  - conflict (206)
  - linker (228-234)
- Uniprot W5IDB2 (235-303)
  - conflict (248)
  - conflict (299)
  - linker (304-310)
- Uniprot P42212 (311-End)
  - conflict (312)
  - conflict (340)
  - conflict (343)
  - conflict (368)
- Uniprot P42212
  - conflict (412)
  - conflict (421)
  - conflict (428)
  - conflict (446)
  - chromophore (447)
  - conflict (450-451)
  - conflict (454)
  - conflict (535)
  - conflict (545)
Chain 'B':
Compound: Green fluorescent protein,Optimized Ratiometric Calcium Sensor,Green fluorescent protein,Green fluorescent protein
Species: Aequorea victoria [TaxId:6100]
Gene: GFP
Database cross-references and differences (RAF-indexed):
- Uniprot P42212 (Start-227)
  - conflict (64)
  - chromophore (65)
  - conflict (72)
  - conflict (145-148)
  - conflict (153)
  - conflict (163)
  - conflict (166-169)
  - conflict (206)
  - linker (228-234)
- Uniprot W5IDB2 (235-303)
  - conflict (248)
  - conflict (299)
  - linker (304-310)
- Uniprot P42212 (311-End)
  - conflict (312)
  - conflict (340)
  - conflict (343)
  - conflict (368)
- Uniprot P42212
  - conflict (412)
  - conflict (421)
  - conflict (428)
  - conflict (446)
  - chromophore (447)
  - conflict (450-451)
  - conflict (454)
  - conflict (535)
  - conflict (545)
Heterogens: CA, GOL, PG4, FMT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>6gelA (A:)
mvskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwpt
lvttltwgvqcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtl
vnrielkgidfkedgnilghkleynaihgnvyitadkqkngikanfglncniedgsvqla
dhyqqntpigdgpvllpdnhylstqsklskdpnekrdhmvllefvtaarmqvadaseeel
secfrifdfdgngfidreefgdiirltgeqltdedvdeifgdsdtdkngridfdeflkmv
envqpiypelmggvqladhyqqntpigdgpvllpdnhylsyqsklskdpnekrdhmvlle
fvtaagitlgmdelykggtggsmvskgeelftgvvpilveldgdvnghkfsvrgegegda
tngkltlklicttgklpvpwptlvttlgyglmcfarypdhmkqhdffksampegyvqert
iffkddgnyktraevkfegdtlvnrielkgidfkedgnilghkleynynshnvyitadkq
kngikanfkirhnied

Sequence, based on observed residues (ATOM records):

>6gelA (A:)
geelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlvtt
ltwgvqcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvnri
elkgidfkedgnilghkleynaihgnvyitadkqkngikanfglncniedgsvqladhyq
qntpigdgpvllpdnhylstqsklskdpnekrdhmvllefvtaarmqvadaseeelsecf
rifdfdgngfidreefgdiirltgeqltdedvdeifgdsdtdkngridfdeflkmvenvq
piypelmggvqladhyqqntpigdgpvllpdnhylsyqsklskdpnekrdhmvllefvta
agitlgkgeelftgvvpilveldgdvnghkfsvrgegegdatngkltlklicttgklpvp
wptlvttlgyglmcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfeg
dtlvnrielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhnie

Chain 'B':
Sequence, based on SEQRES records:

>6gelB (B:)
mvskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwpt
lvttltwgvqcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtl
vnrielkgidfkedgnilghkleynaihgnvyitadkqkngikanfglncniedgsvqla
dhyqqntpigdgpvllpdnhylstqsklskdpnekrdhmvllefvtaarmqvadaseeel
secfrifdfdgngfidreefgdiirltgeqltdedvdeifgdsdtdkngridfdeflkmv
envqpiypelmggvqladhyqqntpigdgpvllpdnhylsyqsklskdpnekrdhmvlle
fvtaagitlgmdelykggtggsmvskgeelftgvvpilveldgdvnghkfsvrgegegda
tngkltlklicttgklpvpwptlvttlgyglmcfarypdhmkqhdffksampegyvqert
iffkddgnyktraevkfegdtlvnrielkgidfkedgnilghkleynynshnvyitadkq
kngikanfkirhnied

Sequence, based on observed residues (ATOM records):

>6gelB (B:)
geelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlvtt
ltwgvqcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvnri
elkgidfkedgnilghkleynaihgnvyitadkqkngikanfglncnievqladhyqqnt
pigdgpvllpdnhylstqsklskdpnekrdhmvllefvtaarmqvadaseeelsecfrif
dfdgngfidreefgdiirltgeqltdedvdeifgdsdtdkngridfdeflkmvenvqpiy
pelmggvqladhyqqntpigdgpvllpdnhylsyqsklskdpnekrdhmvllefvtaagi
tlgmkgeelftgvvpilveldgdvnghkfsvrgegegdatngkltlklicttgklpvpwp
tlvttlgyglmcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdt
lvnrielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhnie