PDB entry 6gef

View 6gef on RCSB PDB site
Description: x-ray structure of the yersinia pseudotuberculosis atpase dotb
Deposited on 2018-04-26, released 2018-05-30
The last revision was dated 2018-10-03, with a file datestamp of 2018-09-28.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Type IV secretion system protein DotB
    Species: Yersinia pseudotuberculosis IP 31758 [TaxId:349747]
    Gene: YpsIP31758_B0110
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0U1QTI9 (15-400)
      • expression tag (14)
      • expression tag (401)
  • Chain 'B':
    Compound: Type IV secretion system protein DotB
    Species: Yersinia pseudotuberculosis IP 31758 [TaxId:349747]
    Gene: YpsIP31758_B0110
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0U1QTI9 (Start-400)
      • expression tag (401)
  • Chain 'C':
    Compound: Type IV secretion system protein DotB
    Species: Yersinia pseudotuberculosis IP 31758 [TaxId:349747]
    Gene: YpsIP31758_B0110
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0U1QTI9 (Start-400)
      • expression tag (401)
  • Chain 'D':
    Compound: Type IV secretion system protein DotB
    Species: Yersinia pseudotuberculosis IP 31758 [TaxId:349747]
    Gene: YpsIP31758_B0110
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Type IV secretion system protein DotB
    Species: Yersinia pseudotuberculosis IP 31758 [TaxId:349747]
    Gene: YpsIP31758_B0110
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Type IV secretion system protein DotB
    Species: Yersinia pseudotuberculosis IP 31758 [TaxId:349747]
    Gene: YpsIP31758_B0110
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0U1QTI9 (Start-400)
      • expression tag (401)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gefA (A:)
maswshpqfekiegreplhlpilefkteyrypstfeheaqfkdtvleflaheasdiiikq
gvaisakvkgtlctlstrtlnfneierialwasgsssvltelaskklintryevfhptkl
ttggqkqrfgyrvnispvyiqgkttaeivmrsipldplpladiglspelvnqmcpdngiv
mvagktssgksttfssiiryimendtpikghllthedpiefvydniksahsiiaqsqipe
qfssfaianqealrrtpnlimigelrdkqsiesafeaantghpvfatvhsqncsavmrrl
isrfdesvrgaaiydlvettrfimaqtlvrktdgnlvaareylnfttdireqllslsdmg
kvasevrrlvdefghpfsleaerlhsdgiidghvakrlsmms

    Sequence, based on observed residues (ATOM records):
    >6gefA (A:)
replhlpilefkteyrypstfeheaqfkdtvleflaheasdiiikqgvaisakvkgtlct
lstrtlnfneierialwasgsssvltelaskklintryevfhptklttggqkqrfgyrvn
ispvyiqgkttaeivmrsipldplpladiglspelvnqmcpdngivmvagktssgksttf
ssiiryimendtpikghllthedpiefvydniksahsiiaqsqipeqfssfaianqealr
rtpnlimigelrdkqsiesafeaantghpvfatvhsqncsavmrrlisrfdesvrgaaiy
dlvettrfimaqtlvrktdgnlvaareylnfttdireqllslsdmgkvasevrrlvdefg
hpfsleaerlhsdgiidghvakrlsmms

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gefB (B:)
maswshpqfekiegreplhlpilefkteyrypstfeheaqfkdtvleflaheasdiiikq
gvaisakvkgtlctlstrtlnfneierialwasgsssvltelaskklintryevfhptkl
ttggqkqrfgyrvnispvyiqgkttaeivmrsipldplpladiglspelvnqmcpdngiv
mvagktssgksttfssiiryimendtpikghllthedpiefvydniksahsiiaqsqipe
qfssfaianqealrrtpnlimigelrdkqsiesafeaantghpvfatvhsqncsavmrrl
isrfdesvrgaaiydlvettrfimaqtlvrktdgnlvaareylnfttdireqllslsdmg
kvasevrrlvdefghpfsleaerlhsdgiidghvakrlsmms

    Sequence, based on observed residues (ATOM records):
    >6gefB (B:)
hlpilefkteyrypstfeheaqfkdtvleflaheasdiiikqgvaisakvkgtlctlstr
tlnfneierialwasgsssvltelaskklintryevfhptklttggqkqrfgyrvnispv
yiqgkttaeivmrsipldplpladiglspelvnqmcpdngivmvagktssgksttfssii
ryimendtpikghllthedpiefvydniksahsiiaqsqipeqfssfaianqealrrtpn
limigelrdkqsiesafeaantghpvfatvhsqncsavmrrlisrfdesvrgaaiydlve
ttrfimaqtlvrktdgnlvaareylnfttdireqllslsdmgkvasevrrlvdefghpfs
leaerlhsdgiidghvakrlsmms

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gefC (C:)
maswshpqfekiegreplhlpilefkteyrypstfeheaqfkdtvleflaheasdiiikq
gvaisakvkgtlctlstrtlnfneierialwasgsssvltelaskklintryevfhptkl
ttggqkqrfgyrvnispvyiqgkttaeivmrsipldplpladiglspelvnqmcpdngiv
mvagktssgksttfssiiryimendtpikghllthedpiefvydniksahsiiaqsqipe
qfssfaianqealrrtpnlimigelrdkqsiesafeaantghpvfatvhsqncsavmrrl
isrfdesvrgaaiydlvettrfimaqtlvrktdgnlvaareylnfttdireqllslsdmg
kvasevrrlvdefghpfsleaerlhsdgiidghvakrlsmms

    Sequence, based on observed residues (ATOM records):
    >6gefC (C:)
lhlpilefkteyrypstfeheaqfkdtvleflaheasdiiikqgvaisakvkgtlctlst
rtlnfneierialwasgsssvltelaskklintryevfhptklttggqkqrfgyrvnisp
vyiqgkttaeivmrsipldplpladiglspelvnqmcpdngivmvagktssgksttfssi
iryimendtpikghllthedpiefvydniksahsiiaqsqipeqfssfaianqealrrtp
nlimigelrdkqsiesafeaantghpvfatvhsqncsavmrrlisrfdesvrgaaiydlv
ettrfimaqtlvrktdgnlvaareylnfttdireqllslsdmgkvasevrrlvdefghpf
sleaerlhsdgiidghvakrlsmms

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6gefD (D:)
maswshpqfekiegreplhlpilefkteyrypstfeheaqfkdtvleflaheasdiiikq
gvaisakvkgtlctlstrtlnfneierialwasgsssvltelaskklintryevfhptkl
ttggqkqrfgyrvnispvyiqgkttaeivmrsipldplpladiglspelvnqmcpdngiv
mvagktssgksttfssiiryimendtpikghllthedpiefvydniksahsiiaqsqipe
qfssfaianqealrrtpnlimigelrdkqsiesafeaantghpvfatvhsqncsavmrrl
isrfdesvrgaaiydlvettrfimaqtlvrktdgnlvaareylnfttdireqllslsdmg
kvasevrrlvdefghpfsleaerlhsdgiidghvakrlsmms

    Sequence, based on observed residues (ATOM records):
    >6gefD (D:)
plhlpilefkteyrypstfeheaqfkdtvleflaheasdiiikqgvaisakvkgtlctls
trtlnfneierialwasgsssvltelaskklintryevfhptklttggqkqrfgyrvnis
pvyiqgkttaeivmrsipldplpladiglspelvnqmcpdngivmvagktssgksttfss
iiryimendtpikghllthedpiefvydniksahsiiaqsqipeqfssfaianqealrrt
pnlimigelrdkqsiesafeaantghpvfatvhsqncsavmrrlisrfdesvrgaaiydl
vettrfimaqtlvrktdgnlvaareylnfttdireqllslsdmgkvasevrrlvdefghp
fsleaerlhsdgiidghvakrlsmm

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6gefE (E:)
maswshpqfekiegreplhlpilefkteyrypstfeheaqfkdtvleflaheasdiiikq
gvaisakvkgtlctlstrtlnfneierialwasgsssvltelaskklintryevfhptkl
ttggqkqrfgyrvnispvyiqgkttaeivmrsipldplpladiglspelvnqmcpdngiv
mvagktssgksttfssiiryimendtpikghllthedpiefvydniksahsiiaqsqipe
qfssfaianqealrrtpnlimigelrdkqsiesafeaantghpvfatvhsqncsavmrrl
isrfdesvrgaaiydlvettrfimaqtlvrktdgnlvaareylnfttdireqllslsdmg
kvasevrrlvdefghpfsleaerlhsdgiidghvakrlsmms

    Sequence, based on observed residues (ATOM records):
    >6gefE (E:)
plhlpilefkteyrypstfeheaqfkdtvleflaheasdiiikqgvaisakvkgtlctls
trtlnfneierialwasgsssvltelaskklintryevfhptklttggqkqrfgyrvnis
pvyiqgkttaeivmrsipldplpladiglspelvnqmcpdngivmvagktssgksttfss
iiryimendtpikghllthedpiefvydniksahsiiaqsqipeqfssfaianqealrrt
pnlimigelrdkqsiesafeaantghpvfatvhsqncsavmrrlisrfdesvrgaaiydl
vettrfimaqtlvrktdgnlvaareylnfttdireqllslsdmgkvasevrrlvdefghp
fsleaerlhsdgiidghvakrlsmm

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6gefF (F:)
maswshpqfekiegreplhlpilefkteyrypstfeheaqfkdtvleflaheasdiiikq
gvaisakvkgtlctlstrtlnfneierialwasgsssvltelaskklintryevfhptkl
ttggqkqrfgyrvnispvyiqgkttaeivmrsipldplpladiglspelvnqmcpdngiv
mvagktssgksttfssiiryimendtpikghllthedpiefvydniksahsiiaqsqipe
qfssfaianqealrrtpnlimigelrdkqsiesafeaantghpvfatvhsqncsavmrrl
isrfdesvrgaaiydlvettrfimaqtlvrktdgnlvaareylnfttdireqllslsdmg
kvasevrrlvdefghpfsleaerlhsdgiidghvakrlsmms

    Sequence, based on observed residues (ATOM records):
    >6gefF (F:)
plhlpilefkteyrypstfeheaqfkdtvleflaheasdiiikqgvaisakvkgtlctls
trtlnfneierialwasgsssvltelaskklintryevfhptklttggqkqrfgyrvnis
pvyiqgkttaeivmrsipldplpladiglspelvnqmcpdngivmvagktssgksttfss
iiryimendtpikghllthedpiefvydniksahsiiaqsqipeqfssfaianqealrrt
pnlimigelrdkqsiesafeaantghpvfatvhsqncsavmrrlisrfdesvrgaaiydl
vettrfimaqtlvrktdgnlvaareylnfttdireqllslsdmgkvasevrrlvdefghp
fsleaerlhsdgiidghvakrlsmms