PDB entry 6gcm

View 6gcm on RCSB PDB site
Description: Escherichia coli DPS
Class: DNA binding protein
Keywords: DNA-binding protein, DNA binding protein
Deposited on 2018-04-18, released 2019-05-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-05-01, with a file datestamp of 2019-04-26.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (Start-158)
  Domains in SCOPe 2.08: d6gcma_
• Chain 'B':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
• Chain 'C':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
• Chain 'D':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Gene: dps, pexB, vtm, b0812, JW0797
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-155)
  Domains in SCOPe 2.08: d6gcmd_
• Chain 'E':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
  Domains in SCOPe 2.08: d6gcme_
• Chain 'F':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
  Domains in SCOPe 2.08: d6gcmf_
• Chain 'G':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
• Chain 'H':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
  Domains in SCOPe 2.08: d6gcmh_
• Chain 'I':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
  Domains in SCOPe 2.08: d6gcmi_
• Chain 'J':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
  Domains in SCOPe 2.08: d6gcmj_
• Chain 'K':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
  Domains in SCOPe 2.08: d6gcmk_
• Chain 'L':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
• Chain 'b':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-158)
  Domains in SCOPe 2.08: d6gcmb_
• Chain 'c':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
  Domains in SCOPe 2.08: d6gcmc_
• Chain 'd':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
• Chain 'e':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Gene: dps, pexB, vtm, b0812, JW0797
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-155)
• Chain 'f':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-150)
• Chain 'g':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
  Domains in SCOPe 2.08: d6gcmg_
• Chain 'h':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
• Chain 'i':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
• Chain 'j':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
• Chain 'k':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
• Chain 'l':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
  Domains in SCOPe 2.08: d6gcml_
• Chain 'm':
  Compound: DNA protection during starvation protein
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ABT2 (0-153)
  Domains in SCOPe 2.08: d6gcmm_
• Heterogens: HOH

PDB Chain Sequences:

• Chain 'A':
  Sequence, based on SEQRES records: (download)
  

  >6gcmA (A:)
  skatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldg
  frtalidhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaiv
  andvrkaigeakdddtadiltaasrdldkflwfiesnie
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >6gcmA (A:)
  nllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrta
  lidhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandv
  rkaigeakdddtadiltaasrdldkflwfiesnie
  

  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6gcmD (D:)
  tnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrt
  alidhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivand
  vrkaigeakdddtadiltaasrdldkflwfiesnie
  

  
  
• Chain 'E':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6gcmE (E:)
  llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
  idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
  kaigeakdddtadiltaasrdldkflwfiesnie
  

  
  
• Chain 'F':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6gcmF (F:)
  llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
  idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
  kaigeakdddtadiltaasrdldkflwfiesnie
  

  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6gcmH (H:)
  llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
  idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
  kaigeakdddtadiltaasrdldkflwfiesnie
  

  
  
• Chain 'I':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6gcmI (I:)
  llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
  idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
  kaigeakdddtadiltaasrdldkflwfiesnie
  

  
  
• Chain 'J':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6gcmJ (J:)
  llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
  idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
  kaigeakdddtadiltaasrdldkflwfiesnie
  

  
  
• Chain 'K':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6gcmK (K:)
  llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
  idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
  kaigeakdddtadiltaasrdldkflwfiesnie
  

  
  
• Chain 'L':
  No sequence available.
  
  
• Chain 'b':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6gcmb (b:)
  skatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldg
  frtalidhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaiv
  andvrkaigeakdddtadiltaasrdldkflwfiesnie
  

  
  
• Chain 'c':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6gcmc (c:)
  llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
  idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
  kaigeakdddtadiltaasrdldkflwfiesnie
  

  
  
• Chain 'd':
  No sequence available.
  
  
• Chain 'e':
  No sequence available.
  
  
• Chain 'f':
  No sequence available.
  
  
• Chain 'g':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6gcmg (g:)
  llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
  idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
  kaigeakdddtadiltaasrdldkflwfiesnie
  

  
  
• Chain 'h':
  No sequence available.
  
  
• Chain 'i':
  No sequence available.
  
  
• Chain 'j':
  No sequence available.
  
  
• Chain 'k':
  No sequence available.
  
  
• Chain 'l':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6gcml (l:)
  llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
  idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
  kaigeakdddtadiltaasrdldkflwfiesnie
  

  
  
• Chain 'm':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6gcmm (m:)
  llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
  idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
  kaigeakdddtadiltaasrdldkflwfiesnie