PDB entry 6gcm

View 6gcm on RCSB PDB site
Description: Escherichia coli DPS
Class: DNA binding protein
Keywords: DNA-binding protein, DNA binding protein
Deposited on 2018-04-18, released 2019-05-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-05-01, with a file datestamp of 2019-04-26.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6gcma_
  • Chain 'B':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: dps, pexB, vtm, b0812, JW0797
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6gcmd_
  • Chain 'E':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6gcme_
  • Chain 'F':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6gcmf_
  • Chain 'G':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6gcmh_
  • Chain 'I':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6gcmi_
  • Chain 'J':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6gcmj_
  • Chain 'K':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6gcmk_
  • Chain 'L':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6gcmb_
  • Chain 'c':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6gcmc_
  • Chain 'd':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: dps, pexB, vtm, b0812, JW0797
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'g':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6gcmg_
  • Chain 'h':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'i':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'j':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'k':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'l':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6gcml_
  • Chain 'm':
    Compound: DNA protection during starvation protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6gcmm_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6gcmA (A:)
    skatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldg
    frtalidhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaiv
    andvrkaigeakdddtadiltaasrdldkflwfiesnie
    

    Sequence, based on observed residues (ATOM records): (download)
    >6gcmA (A:)
    nllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrta
    lidhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandv
    rkaigeakdddtadiltaasrdldkflwfiesnie
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6gcmD (D:)
    tnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrt
    alidhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivand
    vrkaigeakdddtadiltaasrdldkflwfiesnie
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6gcmE (E:)
    llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
    idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
    kaigeakdddtadiltaasrdldkflwfiesnie
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6gcmF (F:)
    llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
    idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
    kaigeakdddtadiltaasrdldkflwfiesnie
    

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6gcmH (H:)
    llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
    idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
    kaigeakdddtadiltaasrdldkflwfiesnie
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6gcmI (I:)
    llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
    idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
    kaigeakdddtadiltaasrdldkflwfiesnie
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6gcmJ (J:)
    llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
    idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
    kaigeakdddtadiltaasrdldkflwfiesnie
    

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6gcmK (K:)
    llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
    idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
    kaigeakdddtadiltaasrdldkflwfiesnie
    

  • Chain 'L':
    No sequence available.

  • Chain 'b':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6gcmb (b:)
    skatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldg
    frtalidhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaiv
    andvrkaigeakdddtadiltaasrdldkflwfiesnie
    

  • Chain 'c':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6gcmc (c:)
    llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
    idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
    kaigeakdddtadiltaasrdldkflwfiesnie
    

  • Chain 'd':
    No sequence available.

  • Chain 'e':
    No sequence available.

  • Chain 'f':
    No sequence available.

  • Chain 'g':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6gcmg (g:)
    llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
    idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
    kaigeakdddtadiltaasrdldkflwfiesnie
    

  • Chain 'h':
    No sequence available.

  • Chain 'i':
    No sequence available.

  • Chain 'j':
    No sequence available.

  • Chain 'k':
    No sequence available.

  • Chain 'l':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6gcml (l:)
    llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
    idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
    kaigeakdddtadiltaasrdldkflwfiesnie
    

  • Chain 'm':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6gcmm (m:)
    llytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrtal
    idhldtmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandvr
    kaigeakdddtadiltaasrdldkflwfiesnie