PDB entry 6gcd

View 6gcd on RCSB PDB site
Description: dna binding domain of restriction endonuclease mcrbc in complex with 5-hydroxymethylcytosine dna
Deposited on 2018-04-17, released 2018-09-19
The last revision was dated 2018-10-24, with a file datestamp of 2018-10-19.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA (5'-d(*gp*ap*gp*ap*(5hc)p*cp*gp*gp*tp*ap*gp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: DNA (5'-d(*gp*cp*tp*ap*(5hc)p*cp*gp*gp*tp*cp*tp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: 5HC, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gcdA (A:)
mesiqpwiekfikqaqqqrsqstkdyptsyrnlrvklsfgygnftsipwfaflgegqeas
ngiypvilyykdfdelvlaygisdtnephaqwqfssdipktiaeyfqatsgvypkkygqs
yyacsqkvsqgidytrfasmldniindyklifnsgksvippleghhhhhh

    Sequence, based on observed residues (ATOM records):
    >6gcdA (A:)
mesiqpwiekfikqaqqqrsqstkdyptsyrnlrvklsfgygnftsipwfaflgegqeas
ngiypvilyykdfdelvlaygisdtnephaqwqfssdipktiaeyfqatsgvypkkygqs
yyacsqkvsqgidytrfasmldniindyklifnsgksvi

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gcdB (B:)
mesiqpwiekfikqaqqqrsqstkdyptsyrnlrvklsfgygnftsipwfaflgegqeas
ngiypvilyykdfdelvlaygisdtnephaqwqfssdipktiaeyfqatsgvypkkygqs
yyacsqkvsqgidytrfasmldniindyklifnsgksvippleghhhhhh

    Sequence, based on observed residues (ATOM records):
    >6gcdB (B:)
mesiqpwiekfikqaqqqrsqstkdyptsyrnlrvklsfgygnftsipwfaflgegqeas
ngiypvilyykdfdelvlaygisdtnephaqwqfssdipktiaeyfqatsgvypkkygqs
yyacsqkvsqgidytrfasmldniindyklifn

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.