SCOPe 2.08: Structural Classification of Proteins

PDB entry 6gbp

View 6gbp on RCSB PDB site
Description: crystal structure of the oligomerization domain of vp35 from ebola virus, mercury derivative
Deposited on 2018-04-16, released 2018-10-10
The last revision was dated 2019-01-16, with a file datestamp of 2019-01-11.
Experiment type: XRAY
Resolution: 3.49 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Polymerase cofactor VP35
Species: Zaire ebolavirus [TaxId:186538]
Gene: VP35
Database cross-references and differences (RAF-indexed):
- Uniprot Q05127 (1-64)
  - expression tag (65-72)
Chain 'B':
Compound: Polymerase cofactor VP35
Species: Zaire ebolavirus [TaxId:186538]
Gene: VP35
Database cross-references and differences (RAF-indexed):
- Uniprot Q05127 (1-64)
  - initiating methionine (0)
  - expression tag (65-72)
Chain 'C':
Compound: Polymerase cofactor VP35
Species: Zaire ebolavirus [TaxId:186538]
Gene: VP35
Database cross-references and differences (RAF-indexed):
- Uniprot Q05127 (1-64)
  - initiating methionine (0)
  - expression tag (65-69)
Chain 'D':
Compound: Polymerase cofactor VP35
Species: Zaire ebolavirus [TaxId:186538]
Gene: VP35
Database cross-references and differences (RAF-indexed):
- Uniprot Q05127 (1-64)
  - initiating methionine (0)
  - expression tag (65-68)
Chain 'E':
Compound: Polymerase cofactor VP35
Species: Zaire ebolavirus [TaxId:186538]
Gene: VP35
Database cross-references and differences (RAF-indexed):
- Uniprot Q05127 (1-64)
  - initiating methionine (0)
  - expression tag (65-72)
Chain 'F':
Compound: Polymerase cofactor VP35
Species: Zaire ebolavirus [TaxId:186538]
Gene: VP35
Database cross-references and differences (RAF-indexed):
- Uniprot Q05127 (1-64)
  - initiating methionine (0)
  - expression tag (65-72)
Chain 'G':
Compound: Polymerase cofactor VP35
Species: Zaire ebolavirus [TaxId:186538]
Gene: VP35
Database cross-references and differences (RAF-indexed):
- Uniprot Q05127 (1-64)
  - expression tag (65-72)
Chain 'H':
Compound: Polymerase cofactor VP35
Species: Zaire ebolavirus [TaxId:186538]
Gene: VP35
Database cross-references and differences (RAF-indexed):
- Uniprot Q05127 (1-64)
  - initiating methionine (0)
  - expression tag (65-72)
Chain 'I':
Compound: Polymerase cofactor VP35
Species: Zaire ebolavirus [TaxId:186538]
Gene: VP35
Database cross-references and differences (RAF-indexed):
- Uniprot Q05127 (1-64)
  - initiating methionine (0)
  - expression tag (65-66)
Chain 'J':
Compound: Polymerase cofactor VP35
Species: Zaire ebolavirus [TaxId:186538]
Gene: VP35
Database cross-references and differences (RAF-indexed):
- Uniprot Q05127 (1-64)
  - initiating methionine (0)
  - expression tag (65)
Chain 'K':
Compound: Polymerase cofactor VP35
Species: Zaire ebolavirus [TaxId:186538]
Gene: VP35
Database cross-references and differences (RAF-indexed):
- Uniprot Q05127 (1-64)
  - initiating methionine (0)
  - expression tag (65-72)
Chain 'L':
Compound: Polymerase cofactor VP35
Species: Zaire ebolavirus [TaxId:186538]
Gene: VP35
Database cross-references and differences (RAF-indexed):
- Uniprot Q05127 (1-64)
  - initiating methionine (0)
  - expression tag (65-72)
Heterogens: HG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>6gbpA (A:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemva
kydlllehhhhhh

Sequence, based on observed residues (ATOM records):

>6gbpA (A:)
sfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemvak
ydlllehhhhhh

Chain 'B':
Sequence; same for both SEQRES and ATOM records:

>6gbpB (B:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemva
kydlllehhhhhh

Chain 'C':
Sequence, based on SEQRES records:

>6gbpC (C:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemva
kydlllehhhhhh

Sequence, based on observed residues (ATOM records):

>6gbpC (C:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemva
kydlllehhh

Chain 'D':
Sequence, based on SEQRES records:

>6gbpD (D:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemva
kydlllehhhhhh

Sequence, based on observed residues (ATOM records):

>6gbpD (D:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktislnrvcaemvak
ydlllehh

Chain 'E':
Sequence; same for both SEQRES and ATOM records:

>6gbpE (E:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemva
kydlllehhhhhh

Chain 'F':
Sequence; same for both SEQRES and ATOM records:

>6gbpF (F:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemva
kydlllehhhhhh

Chain 'G':
Sequence, based on SEQRES records:

>6gbpG (G:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemva
kydlllehhhhhh

Sequence, based on observed residues (ATOM records):

>6gbpG (G:)
sfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemvak
ydlllehhhhhh

Chain 'H':
Sequence; same for both SEQRES and ATOM records:

>6gbpH (H:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemva
kydlllehhhhhh

Chain 'I':
Sequence, based on SEQRES records:

>6gbpI (I:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemva
kydlllehhhhhh

Sequence, based on observed residues (ATOM records):

>6gbpI (I:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktnrvcaemvakydl
lle

Chain 'J':
Sequence, based on SEQRES records:

>6gbpJ (J:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemva
kydlllehhhhhh

Sequence, based on observed residues (ATOM records):

>6gbpJ (J:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemva
kydlll

Chain 'K':
Sequence; same for both SEQRES and ATOM records:

>6gbpK (K:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemva
kydlllehhhhhh

Chain 'L':
Sequence; same for both SEQRES and ATOM records:

>6gbpL (L:)
msfeevvqtlaslatvvqqqtiasesleqritslenglkpvydmaktisslnrvcaemva
kydlllehhhhhh