PDB entry 6gbh

View 6gbh on RCSB PDB site
Description: helicobacter pylori adhesin hopq type ii bound to the n-terminal domain of human ceacam1
Deposited on 2018-04-13, released 2018-06-27
The last revision was dated 2018-07-11, with a file datestamp of 2018-07-06.
Experiment type: XRAY
Resolution: 2.59 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HopQ
    Species: Helicobacter pylori [TaxId:210]
    Gene: hopQ
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Carcinoembryonic antigen-related cell adhesion molecule 1
    Species: Homo sapiens [TaxId:9606]
    Gene: CEACAM1, BGP, BGP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: HopQ
    Species: Helicobacter pylori [TaxId:210]
    Gene: hopQ
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Carcinoembryonic antigen-related cell adhesion molecule 1
    Species: Homo sapiens [TaxId:9606]
    Gene: CEACAM1, BGP, BGP1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gbhA (A:)
mavqkvknadkvqklsdayenlnkllanhshsnpeainansatainqaignlnantqnli
dktdnspayqatllalkstvglwnsiayavicggytdkpnhnttetfynqpgqgsdsitc
gghvgllqagknnslsieqfatlnkayqiiqaalkqglpalsdtkktvevtiktatnann
invnnnnnnaadttvsitdtfindaqnlltqaqtiintlqdncpqlkgksssnggtngan
tpswqtganqnscsvfgtefsaisdmisnaqnivqetqqlnttplksiaqpnnfnlnspn
sialaqsmlknaqsqaavlklanqvgsdfnristgvlknyieecnanassesvssntwgk
gcagvkqtltslensnasfssqtpqinqaqnlantivqelghnpfkrvgiissqtnngah
hhhhh

    Sequence, based on observed residues (ATOM records):
    >6gbhA (A:)
tainqaignlnantqnlidktdnspayqatllalkstvglwnsiayavicggytdkpnhn
ttetfynqpgqgsdsitcgghvgllqagknnslsieqfatlnkayqiiqaalkqglpals
dtkktvevtiktatndttvsitdtfindaqnlltqaqtiintlqdncpqlkgksntpswq
tganqnscsvfgtefsaisdmisnaqnivqetqqlnttplknlnspnsialaqsmlknaq
sqaavlklanqvgsdfnristgvlknyieecnavssntwgkgcagvkqtltslensnasf
ssqtpqinqaqnlantiv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gbhB (B:)
mqlttesmpfnvaegkevlllvhnlpqqlfgyswykgervdgnrqivgyaigtqqatpgp
ansgretiypnaslliqnvtqndtgfytlqviksdlvneeatgqfhvyphhhhhh

    Sequence, based on observed residues (ATOM records):
    >6gbhB (B:)
qlttesmpfnvaegkevlllvhnlpqqlfgyswykgervdgnrqivgyaigtqqatpgpa
nsgretiypnaslliqnvtqndtgfytlqviksdlvneeatgqfhvyp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gbhC (C:)
mavqkvknadkvqklsdayenlnkllanhshsnpeainansatainqaignlnantqnli
dktdnspayqatllalkstvglwnsiayavicggytdkpnhnttetfynqpgqgsdsitc
gghvgllqagknnslsieqfatlnkayqiiqaalkqglpalsdtkktvevtiktatnann
invnnnnnnaadttvsitdtfindaqnlltqaqtiintlqdncpqlkgksssnggtngan
tpswqtganqnscsvfgtefsaisdmisnaqnivqetqqlnttplksiaqpnnfnlnspn
sialaqsmlknaqsqaavlklanqvgsdfnristgvlknyieecnanassesvssntwgk
gcagvkqtltslensnasfssqtpqinqaqnlantivqelghnpfkrvgiissqtnngah
hhhhh

    Sequence, based on observed residues (ATOM records):
    >6gbhC (C:)
satainqaignlnantqnlidktdnspayqatllalkstvglwnsiayavicggytdkpn
hnttetfynqpgqgsdsitcgghvgllqagknnslsieqfatlnkayqiiqaalkqglpa
lsdtkktvevtiktatndttvsitdtfindaqnlltqaqtiintlqdncpqlkgkssntp
swqtganqnscsvfgtefsaisdmisnaqnivqetqqlnttplksinsialaqsmlknaq
sqaavlklanqvgsdfnristgvlknyieecnsvssntwgkgcagvkqtltslensnasf
ssqtpqinqaqnlantiv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6gbhD (D:)
mqlttesmpfnvaegkevlllvhnlpqqlfgyswykgervdgnrqivgyaigtqqatpgp
ansgretiypnaslliqnvtqndtgfytlqviksdlvneeatgqfhvyphhhhhh

    Sequence, based on observed residues (ATOM records):
    >6gbhD (D:)
qlttesmpfnvaegkevlllvhnlpqqlfgyswykgervdgnrqivgyaigtqqatpgpa
nsgretiypnaslliqnvtqndtgfytlqviksdlvneeatgqfhvyp