PDB entry 6gbg

View 6gbg on RCSB PDB site
Description: helicobacter pylori adhesin hopq type i bound to the n-terminal domain of human ceacam1
Deposited on 2018-04-13, released 2018-06-27
The last revision was dated 2018-07-11, with a file datestamp of 2018-07-06.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Outer membrane protein
    Species: Helicobacter pylori (strain G27) [TaxId:563041]
    Gene: hopQ, HPG27_1120
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Carcinoembryonic antigen-related cell adhesion molecule 1
    Species: Homo sapiens [TaxId:9606]
    Gene: CEACAM1, BGP, BGP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13688 (1-108)
      • initiating methionine (0)
      • expression tag (109)
  • Heterogens: BR, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gbgA (A:)
mnadkvqklsdtyeqlsrlltndngtnsktsaqainqavnnlneraktlaggttnspayq
atllalrsvlglwnsmgyavicggytkspgennqkdfhytdengngttincggstnsngt
hsyngtntlkadknvslsieqyekiheayqilskalkqaglaplnskgekleahvttsky
qqdnqtktttsvidttndaqnlltqaqtivntlkdycpiliakssssnggtnnantpswq
tagggknscatfgaefsaasdminnaqkivqetqqlsanqpknitqphnlnlnspsslta
laqkmlknaqsqaeilklanqvesdfnklssghlkdyigkcdasaissanmtmqnqknnw
gngcagveetqsllktsaadfnnqtpqinqaqnlantliqelgnnhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6gbgA (A:)
qainqavnnlneraktlaggttnspayqatllalrsvlglwnsmgyavicggytkspgen
nqkdfhytgttincggstnsngthsyngtntlkadknvslsieqyekiheayqilskalk
qaglaplnskgekleahvttskyqtktttsvidttndaqnlltqaqtivntlkdycpili
akntpswqtagggknscatfgaefsaasdminnaqkivqetqqlsanqpnspssltalaq
kmlknaqsqaeilklanqvesdfnklssghlkdyigkcdnnwgngcagveetqsllktsa
adfnnqtpqinqaqnlantli

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6gbgD (D:)
mqlttesmpfnvaegkevlllvhnlpqqlfgyswykgervdgnrqivgyaigtqqatpgp
ansgretiypnaslliqnvtqndtgfytlqviksdlvneeatgqfhvyphhhhhh

    Sequence, based on observed residues (ATOM records):
    >6gbgD (D:)
mqlttesmpfnvaegkevlllvhnlpqqlfgyswykgervdgnrqivgyaigtqqatpgp
ansgretiypnaslliqnvtqndtgfytlqviksdlvneeatgqfhvyph