PDB entry 6gb7

View 6gb7 on RCSB PDB site
Description: structure of h-2db with scoop loop from tapasin
Deposited on 2018-04-13, released 2019-03-06
The last revision was dated 2019-03-20, with a file datestamp of 2019-03-15.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H-2 class I histocompatibility antigen, D-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-D1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (0-99)
      • cloning artifact (0)
      • variant (85)
  • Chain 'C':
    Compound: H-2 class I histocompatibility antigen, D-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-D1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (0-99)
      • cloning artifact (0)
      • variant (85)
  • Chain 'E':
    Compound: H-2 class I histocompatibility antigen, D-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-D1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (0-98)
      • variant (84)
  • Chain 'G':
    Compound: H-2 class I histocompatibility antigen, D-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-D1
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (0-99)
      • cloning artifact (0)
      • variant (85)
  • Chain 'I':
    Compound: phe-ala-pro-gly-asn-tyr-pro
    Species: SENDAI VIRUS, synthetic [TaxId:11191]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GB7 (0-6)
  • Chain 'J':
    Compound: phe-ala-pro-gly-asn-tyr-pro
    Species: SENDAI VIRUS, synthetic [TaxId:11191]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GB7 (0-6)
  • Chain 'K':
    Compound: phe-ala-pro-gly-asn-tyr-pro
    Species: SENDAI VIRUS, synthetic [TaxId:11191]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GB7 (0-6)
  • Chain 'L':
    Compound: phe-ala-pro-gly-asn-tyr-pro
    Species: SENDAI VIRUS, synthetic [TaxId:11191]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GB7 (0-6)
  • Chain 'P':
    Compound: gly-gly-leu-ser
    Species: MUS MUSCULUS, synthetic [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GB7
  • Chain 'R':
    Compound: gly-gly-leu-ser
    Species: MUS MUSCULUS, synthetic [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GB7 (Start-9)
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gb7A (A:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwepppstdsymvivavlgvlgamaiig
avvafvmkrrrntggkggdyalapgsqssemslrdcka

    Sequence, based on observed residues (ATOM records):
    >6gb7A (A:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnllrt
dspkahvthhprgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkw
asvvvplgkeqnytcrvyheglpepltlrwe

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6gb7B (B:)
giqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gb7C (C:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwepppstdsymvivavlgvlgamaiig
avvafvmkrrrntggkggdyalapgsqssemslrdcka

    Sequence, based on observed residues (ATOM records):
    >6gb7C (C:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngllrtd
spkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqk
wasvvvplgkeqnytcrvyheglpepltlrwep

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6gb7D (D:)
giqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6gb7E (E:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwepppstdsymvivavlgvlgamaiig
avvafvmkrrrntggkggdyalapgsqssemslrdcka

    Sequence, based on observed residues (ATOM records):
    >6gb7E (E:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnartd
spkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqk
wasvvvpeqnytcrvyheglpepltlrwep

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6gb7F (F:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6gb7G (G:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwepppstdsymvivavlgvlgamaiig
avvafvmkrrrntggkggdyalapgsqssemslrdcka

    Sequence, based on observed residues (ATOM records):
    >6gb7G (G:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngtdspk
ahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwas
vvvplgkeqnytcrvyheglpepltlrwep

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6gb7H (H:)
giqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6gb7I (I:)
fapgnyp

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6gb7J (J:)
fapgnyp

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6gb7K (K:)
fapgnyp

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6gb7L (L:)
fapgnyp

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6gb7P (P:)
edagggglsk

    Sequence, based on observed residues (ATOM records):
    >6gb7P (P:)
ggls

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6gb7R (R:)
edagggglsk

    Sequence, based on observed residues (ATOM records):
    >6gb7R (R:)
gglsk