PDB entry 6gb5

View 6gb5 on RCSB PDB site
Description: structure of h-2db with truncated sev peptide and gl
Deposited on 2018-04-13, released 2019-03-06
The last revision was dated 2019-03-20, with a file datestamp of 2019-03-15.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H-2 class I histocompatibility antigen, D-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-D1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (0-98)
      • variant (84)
  • Chain 'C':
    Compound: H-2 class I histocompatibility antigen, D-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-D1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (0-98)
      • variant (84)
  • Chain 'E':
    Compound: phe-ala-pro-gly-asn-tyr-pro
    Species: SENDAI VIRUS, synthetic [TaxId:11191]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GB5 (0-6)
  • Chain 'F':
    Compound: phe-ala-pro-gly-asn-tyr-pro
    Species: SENDAI VIRUS, synthetic [TaxId:11191]
    Database cross-references and differences (RAF-indexed):
    • PDB 6GB5 (0-6)
  • Chain 'G':
    Compound: gly-leu
    Species: MUS MUSCULUS, synthetic [TaxId:10090]
  • Chain 'H':
    Compound: gly-leu
    Species: MUS MUSCULUS, synthetic [TaxId:10090]
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gb5A (A:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwepppstdsymvivavlgvlgamaiig
avvafvmkrrrntggkggdyalapgsqssemslrdcka

    Sequence, based on observed residues (ATOM records):
    >6gb5A (A:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprsevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfq
kwasvvvplgkeqnytcrvyheglpepltlrwep

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6gb5B (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6gb5C (C:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwepppstdsymvivavlgvlgamaiig
avvafvmkrrrntggkggdyalapgsqssemslrdcka

    Sequence, based on observed residues (ATOM records):
    >6gb5C (C:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqmelvetrpagdgtf
qkwasvvvplgkeqnytcrvyheglpepltlrwep

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6gb5D (D:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6gb5E (E:)
fapgnyp

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6gb5F (F:)
fapgnyp

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.