PDB entry 6gav

View 6gav on RCSB PDB site
Description: extremely 'open' clamp structure of dna gyrase: role of the corynebacteriales gyrb specific insert
Deposited on 2018-04-12, released 2019-02-20
The last revision was dated 2019-04-10, with a file datestamp of 2019-04-05.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA gyrase subunit B,DNA gyrase subunit A
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: gyrA, Rv0006, MTCY10H4.04
    Database cross-references and differences (RAF-indexed):
    • Uniprot F6N7X0 (Start-675)
      • linker (676-678)
    • Uniprot P9WG47 (679-1178)
  • Chain 'B':
    Compound: DNA gyrase subunit B,DNA gyrase subunit A
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: gyrA, Rv0006, MTCY10H4.04
    Database cross-references and differences (RAF-indexed):
    • Uniprot F6N7X0 (Start-675)
      • linker (676-678)
    • Uniprot P9WG47 (679-1178)
  • Heterogens: MES, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6gavA (A:)
mvaaqkkkaqdeygaasitilegleavrkrpgmyigstgerglhhliwevvdnavdeama
gyattvnvvlledggvevaddgrgipvathasgiptvdvvmtqlhaggkfdsdayaisgg
lhgvgvsvvnalstrleveikrdgyewsqvyekseplglkqgaptkktgstvrfwadpav
fetteydfetvarrlqemaflnkgltinltdervtqdevvdevvsdvaeapksaseraae
staphkvksrtfhypgglvdfvkhinrtknaihssivdfsgkgtgheveiamqwnagyse
svhtfantintheggtheegfrsaltsvvnkyakdrkllkdkdpnltgddireglaavis
vkvsepqfegqtktklgntevksfvqkvcneqlthwfeanptdakvvvnkavssaqaria
arkarelvrrksatdigglpgkladcrstdprkselyvvegdsaggsaksgrdsmfqail
plrgkiinvekaridrvlkntevqaiitalgtgihdefdigklryhkivlmadadvdgqh
istllltllfrfmrplienghvflaqpplyklkwqrsdpefaysdrerdglleaglkagk
kinkedgiqrykglgemdakelwettmdpsvrvlrqvtlddaaaadelfsilmgedvdar
rsfitrnakdvrfldvgdltdttlppddsldriepvdieqemqrsyidyamsvivgralp
evrdglkpvhrrvlyamfdsgfrpdrshaksarsvaetmgnyhphgdasiydslvrmaqp
wslryplvdgqgnfgspgndppaamrytearltplamemlreideetvdfipnydgrvqe
ptvlpsrfpnllangsggiavgmatnipphnlreladavfwalenhdadeeetlaavmgr
vkgpdfptaglivgsqgtadayktgrgsirmrgvveveedsrgrtslvitelpyqvnhdn
fitsiaeqvrdgklagisniedqssdrvglrivieikrdavakvvinnlykhtqlqtsfg
anmlaivdgvprtlrldqliryyvdhqldvivrrttyrlrkanerahilrglvkaldald
evialirasetvdiaraglielldideiqaqaildmqlrrlaalerqriiddlakieaei
adledilakperqrgivrdelaeivdrhgddrrtriiaa

    Sequence, based on observed residues (ATOM records):
    >6gavA (A:)
avrkrpgmyigstgerglhhliwevvdnavdeamagyattvnvvlledggvevaddgrgi
pvathasgiptvdvvmtqlhgvsvvnalstrleveikrdgyewsqvyekseplglkqgap
tkktgstvrfwadpavfetteydfetvarrlqemaflnkgltinltdervtqdevvdevv
sdvaeapksaseraaestaphkvksrtfhypgglvdfvkhinrtknaihssivdfsgkgt
gheveiamqwnagysesvhtfantintheggtheegfrsaltsvvnkyakpnltgddire
glaavisvkvsepqfegqtktklgntevksfvqkvcneqlthwfeanptdakvvvnkavs
saqariaarkarelvrrksatdigglpgkladcrstdprkselyvvegdsaggsaksgrd
smfqailplrgkiinvekaridrvlkntevqaiitalgtgihdefdigklryhkivlmad
advdgqhistllltllfrfmrplienghvflaqpplyklkwqrsdpefaysdrerdglle
aglkagkkinkedgiqrykglgemdakelwettmdpsvrvlrqvtlddaaaadelfsilm
gedvdarrsfitrnakdvrfldvgdltdttdriepvdieqemqrsyidyamsvivgralp
evrdglkpvhrrvlyamfdsgfrpdrshaksarsvaetmgnyhphgdasiydslvrmaqp
wslryplvdgqgnfgspgndppaamrytearltplamemlreideetvdfipnydgrvqe
ptvlpsrfpnllangsggiavgmatnipphnlreladavfwalenhdadeeetlaavmgr
vkgpdfptaglivgsqgtadayktgrgsirmrgvveveedsrgrtslvitelpyqvnhdn
fitsiaeqvrdgklagisniedqssdrvglrivieikrdavakvvinnlykhtqlqtsfg
anmlaivdgvprtlrldqliryyvdhqldvivrrttyrlrkanerahilrglvkaldald
evialirasetvdiaraglielldideiqaqaildmqlrrlaalerqriiddlakieaei
adledilakperqrgivrdelaeivdrhgddrrtriiaa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6gavB (B:)
mvaaqkkkaqdeygaasitilegleavrkrpgmyigstgerglhhliwevvdnavdeama
gyattvnvvlledggvevaddgrgipvathasgiptvdvvmtqlhaggkfdsdayaisgg
lhgvgvsvvnalstrleveikrdgyewsqvyekseplglkqgaptkktgstvrfwadpav
fetteydfetvarrlqemaflnkgltinltdervtqdevvdevvsdvaeapksaseraae
staphkvksrtfhypgglvdfvkhinrtknaihssivdfsgkgtgheveiamqwnagyse
svhtfantintheggtheegfrsaltsvvnkyakdrkllkdkdpnltgddireglaavis
vkvsepqfegqtktklgntevksfvqkvcneqlthwfeanptdakvvvnkavssaqaria
arkarelvrrksatdigglpgkladcrstdprkselyvvegdsaggsaksgrdsmfqail
plrgkiinvekaridrvlkntevqaiitalgtgihdefdigklryhkivlmadadvdgqh
istllltllfrfmrplienghvflaqpplyklkwqrsdpefaysdrerdglleaglkagk
kinkedgiqrykglgemdakelwettmdpsvrvlrqvtlddaaaadelfsilmgedvdar
rsfitrnakdvrfldvgdltdttlppddsldriepvdieqemqrsyidyamsvivgralp
evrdglkpvhrrvlyamfdsgfrpdrshaksarsvaetmgnyhphgdasiydslvrmaqp
wslryplvdgqgnfgspgndppaamrytearltplamemlreideetvdfipnydgrvqe
ptvlpsrfpnllangsggiavgmatnipphnlreladavfwalenhdadeeetlaavmgr
vkgpdfptaglivgsqgtadayktgrgsirmrgvveveedsrgrtslvitelpyqvnhdn
fitsiaeqvrdgklagisniedqssdrvglrivieikrdavakvvinnlykhtqlqtsfg
anmlaivdgvprtlrldqliryyvdhqldvivrrttyrlrkanerahilrglvkaldald
evialirasetvdiaraglielldideiqaqaildmqlrrlaalerqriiddlakieaei
adledilakperqrgivrdelaeivdrhgddrrtriiaa

    Sequence, based on observed residues (ATOM records):
    >6gavB (B:)
avrkrpgmyigstgerglhhliwevvdnavdeamagyattvnvvlledggvevaddgrgi
pvathasgiptvdvvmtqlhgvsvvnalstrleveikrdgyewsqvyekseplglkqgap
tkktgstvrfwadpavfetteydfetvarrlqemaflnkgltinltdervtqdevvdevv
sdvaeapksaseraaestkvksrtfhypgglvdfvkhinrtknaihssivdfsgkgtghe
veiamqwnagysesvhtfantintheggtheegfrsaltsvvnkyakkdpnltgddireg
laavisvkvsepqfegqtktklgntevksfvqkvcneqlthwfeanptdakvvvnkavss
aqariaarkarelvrrktdigglpgkladcrstdprkselyvvegdsaggsaksgrdsmf
qailplrgkiinvekaridrvlkntevqaiitalgtgihdefdigklryhkivlmadadv
dgqhistllltllfrfmrplienghvflaqpplyklkwqrsdpefaysdrerdglleagl
kagkkinkedgiqrykglgemdakelwettmdpsvrvlrqvtlddaaaadelfsilmged
vdarrsfitrnakdvrfldvgdltdtsldriepvdieqemqrsyidyamsvivgralpev
rdglkpvhrrvlyamfdsgfrpdrshaksarsvaetmgnyhphgdasiydslvrmaqpws
lryplvdgqgnfgspgndppaamrytearltplamemlreideetvdfipnydgrvqept
vlpsrfpnllangsggiavgmatnipphnlreladavfwalenhdadeeetlaavmgrvk
gpdfptaglivgsqgtadayktgrgsirmrgvveveedsrgrtslvitelpyqvnhdnfi
tsiaeqvrdgklagisniedqssdrvglrivieikrdavakvvinnlykhtqlqtsfgan
mlaivdgvprtlrldqliryyvdhqldvivrrttyrlrkanerahilrglvkaldaldev
ialirasetvdiaraglielldideiqaqaildmqlrrlaalerqriiddlakieaeiad
ledilakperqrgivrdelaeivdrhgddrrtriiaa