PDB entry 6gam

View 6gam on RCSB PDB site
Description: Structure of E14Q variant of E. coli hydrogenase-2 (as-isolated enzyme)
Class: oxidoreductase
Keywords: NiFe hydrogenase, Iron sulphur cluster, periplasm, hydrogen, OXIDOREDUCTASE
Deposited on 2018-04-11, released 2019-02-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-02-20, with a file datestamp of 2019-02-15.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: N/A
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'L':
    Compound: Hydrogenase-2 large chain
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: hybC, b2994, JW2962
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6gaml_
  • Chain 'M':
    Compound: Hydrogenase-2 large chain
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: hybC, b2994, JW2962
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6gamm_
  • Chain 'S':
    Compound: Hydrogenase-2 small chain
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: hybO, yghV, b2997, JW2965
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6gams_
  • Chain 'T':
    Compound: Hydrogenase-2 small chain
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: hybO, yghV, b2997, JW2965
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6gamt_
  • Heterogens: SF4, F3S, FCO, NI, MG, HOH

PDB Chain Sequences:

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6gamL (L:)
msqritidpvtriqghlridceiengvvskawasgtmwrgmeeivknrdprdawmivqri
cgvcttthalssvraaesalnidvpvnaqyirniilaahtthdhivhfyqlsaldwvdit
salqadptkasemlkgvstwhlnspeeftkvqnkikdlvasgqlgifangywghpamklp
pevnliavahylqalecqrdanrvvallggktphiqnlavggvanpinldglgvlnlerl
myiksfidklsdfveqvykvdtaviaafypewltrgkgavnylsvpefptdskngsflfp
ggyienadlssyrpitshsdeylikgiqesakhswykdeapqapwegttipaydgwsddg
kyswvksptfygktvevgplanmlvklaagrestqnklneivaiyqkltgntlevaqlhs
tlgriigrtvhccelqdilqnqysalitnigkgdhttfvkpnipatgefkgvgfleaprg
mlshwmvikdgiisnyqavvpstwnsgprnfnddvgpyeqslvgtpvadpnkplevvrti
hsfdpcmacavhvvdadgnevvsvkvl

    Sequence, based on observed residues (ATOM records): (download) 
    >6gamL (L:)
sqritidpvtriqghlridceiengvvskawasgtmwrgmeeivknrdprdawmivqric
gvcttthalssvraaesalnidvpvnaqyirniilaahtthdhivhfyqlsaldwvdits
alqadptkasemlkgvstwhlnspeeftkvqnkikdlvasgqlgifangywghpamklpp
evnliavahylqalecqrdanrvvallggktphiqnlavggvanpinldglgvlnlerlm
yiksfidklsdfveqvykvdtaviaafypewltrgkgavnylsvpefptdskngsflfpg
gyienadlssyrpitshsdeylikgiqesakhswykdeapqapwegttipaydgwsddgk
yswvksptfygktvevgplanmlvklaagrestqnklneivaiyqkltgntlevaqlhst
lgriigrtvhccelqdilqnqysalitnigkgdhttfvkpnipatgefkgvgfleaprgm
lshwmvikdgiisnyqavvpstwnsgprnfnddvgpyeqslvgtpvadpnkplevvrtih
sfdpcmacavh

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >6gamM (M:)
msqritidpvtriqghlridceiengvvskawasgtmwrgmeeivknrdprdawmivqri
cgvcttthalssvraaesalnidvpvnaqyirniilaahtthdhivhfyqlsaldwvdit
salqadptkasemlkgvstwhlnspeeftkvqnkikdlvasgqlgifangywghpamklp
pevnliavahylqalecqrdanrvvallggktphiqnlavggvanpinldglgvlnlerl
myiksfidklsdfveqvykvdtaviaafypewltrgkgavnylsvpefptdskngsflfp
ggyienadlssyrpitshsdeylikgiqesakhswykdeapqapwegttipaydgwsddg
kyswvksptfygktvevgplanmlvklaagrestqnklneivaiyqkltgntlevaqlhs
tlgriigrtvhccelqdilqnqysalitnigkgdhttfvkpnipatgefkgvgfleaprg
mlshwmvikdgiisnyqavvpstwnsgprnfnddvgpyeqslvgtpvadpnkplevvrti
hsfdpcmacavhvvdadgnevvsvkvl

    Sequence, based on observed residues (ATOM records): (download) 
    >6gamM (M:)
sqritidpvtriqghlridceiengvvskawasgtmwrgmeeivknrdprdawmivqric
gvcttthalssvraaesalnidvpvnaqyirniilaahtthdhivhfyqlsaldwvdits
alqadptkasemlkgvstwhlnspeeftkvqnkikdlvasgqlgifangywghpamklpp
evnliavahylqalecqrdanrvvallggktphiqnlavggvanpinldglgvlnlerlm
yiksfidklsdfveqvykvdtaviaafypewltrgkgavnylsvpefptdskngsflfpg
gyienadlssyrpitshsdeylikgiqesakhswykdeapqapwegttipaydgwsddgk
yswvksptfygktvevgplanmlvklaagrestqnklneivaiyqkltgntlevaqlhst
lgriigrtvhccelqdilqnqysalitnigkgdhttfvkpnipatgefkgvgfleaprgm
lshwmvikdgiisnyqavvpstwnsgprnfnddvgpyeqslvgtpvadpnkplevvrtih
sfdpcmacavh

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >6gamS (S:)
emaesvtnpqrppviwigaqectgctesllrathptvenlvletisleyhevlsaafghq
veenkhnalekykgqyvlvvdgsiplkdngiycmvagepivdhirkaaegaaaiiaigsc
sawggvaaagvnptgavslqevlpgktvinipgcppnphnflatvahiitygkppklddk
nrptfaygrlihehcerrphfdagrfakefgdeghregwclyhlgckgpetygncstlqf
cdvggvwpvaighpcygcneegigfhkgihqlanvenqtprsqkpdvnakeggrshhhhh
h

    Sequence, based on observed residues (ATOM records): (download) 
    >6gamS (S:)
qrppviwigaqectgctesllrathptvenlvletisleyhevlsaafghqveenkhnal
ekykgqyvlvvdgsiplkdngiycmvagepivdhirkaaegaaaiiaigscsawggvaaa
gvnptgavslqevlpgktvinipgcppnphnflatvahiitygkppklddknrptfaygr
lihehcerrphfdagrfakefgdeghregwclyhlgckgpetygncstlqfcdvggvwpv
aighpcygcneegigfhkgihqlanve

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >6gamT (T:)
emaesvtnpqrppviwigaqectgctesllrathptvenlvletisleyhevlsaafghq
veenkhnalekykgqyvlvvdgsiplkdngiycmvagepivdhirkaaegaaaiiaigsc
sawggvaaagvnptgavslqevlpgktvinipgcppnphnflatvahiitygkppklddk
nrptfaygrlihehcerrphfdagrfakefgdeghregwclyhlgckgpetygncstlqf
cdvggvwpvaighpcygcneegigfhkgihqlanvenqtprsqkpdvnakeggrshhhhh
h

    Sequence, based on observed residues (ATOM records): (download) 
    >6gamT (T:)
pqrppviwigaqectgctesllrathptvenlvletisleyhevlsaafghqveenkhna
lekykgqyvlvvdgsiplkdngiycmvagepivdhirkaaegaaaiiaigscsawggvaa
agvnptgavslqevlpgktvinipgcppnphnflatvahiitygkppklddknrptfayg
rlihehcerrphfdagrfakefgdeghregwclyhlgckgpetygncstlqfcdvggvwp
vaighpcygcneegigfhkgihqlanve