PDB entry 6gal

View 6gal on RCSB PDB site
Description: Structure of fully reduced Hydrogenase (Hyd-1) variant E28Q collected at pH 10
Class: oxidoreductase
Keywords: NiFe hydrogenase, Iron sulphur cluster, periplasm, hydrogen, OXIDOREDUCTASE
Deposited on 2018-04-11, released 2019-02-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-10, with a file datestamp of 2019-07-05.
Experiment type: XRAY
Resolution: 1.25 Å
R-factor: N/A
AEROSPACI score: 0.62 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'L':
    Compound: Hydrogenase-1 large chain
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0ACD8 (Start-581)
      • conflict (27)
    Domains in SCOPe 2.08: d6gall_
  • Chain 'M':
    Compound: Hydrogenase-1 large chain
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0ACD8 (Start-581)
      • conflict (27)
    Domains in SCOPe 2.08: d6galm_
  • Chain 'S':
    Compound: Hydrogenase-1 small chain
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: hyaA, b0972, JW0954
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6gals_
  • Chain 'T':
    Compound: Hydrogenase-1 small chain
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: hyaA, b0972, JW0954
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6galt_
  • Heterogens: SF4, F3S, SF3, CL, SO4, EJ2, MG, CXS, LI, HOH

PDB Chain Sequences:

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6galL (L:)
mstqyetqgytinnagrrlvvdpitriqghmrcevnindqnvitnavscgtmfrgleiil
qgrdprdawafvericgvctgvhalasvyaiedaigikvpdnaniirnimlatlwchdhl
vhfyqlagmdwidvldalkadprktselaqslsswpksspgyffdvqnrlkkfveggqlg
ifrngywghpqyklppeanlmgfahylealdfqreivkihavfggknphpnwivggmpca
inidesgavgavnmerlnlvqsiitrtadfinnvmipdalaigqfnkpwseigtglsdkc
vlsygafpdiandfgeksllmpggavingdfnnvlpvdlvdpqqvqefvdhawyrypndq
vgrhpfdgitdpwynpgdvkgsdtniqqlneqeryswikaprwrgnamevgplartliay
hkgdaatvesvdrmmsalnlplsgiqstlgrilcraheaqwaagklqyffdklmtnlkng
nlatastekwepatwptecrgvgfteaprgalghwaairdgkidlyqcvvpttwnasprd
pkgqigayeaalmntkmaipeqpleilrtlhsfdpclacsth

    Sequence, based on observed residues (ATOM records): (download) 
    >6galL (L:)
stqyetqgytinnagrrlvvdpitriqghmrcevnindqnvitnavscgtmfrgleiilq
grdprdawafvericgvctgvhalasvyaiedaigikvpdnaniirnimlatlwchdhlv
hfyqlagmdwidvldalkadprktselaqslsswpksspgyffdvqnrlkkfveggqlgi
frngywghpqyklppeanlmgfahylealdfqreivkihavfggknphpnwivggmpcai
nidesgavgavnmerlnlvqsiitrtadfinnvmipdalaigqfnkpwseigtglsdkcv
lsygafpdiandfgeksllmpggavingdfnnvlpvdlvdpqqvqefvdhawyrypndqv
grhpfdgitdpwynpgdvkgsdtniqqlneqeryswikaprwrgnamevgplartliayh
kgdaatvesvdrmmsalnlplsgiqstlgrilcraheaqwaagklqyffdklmtnlkngn
latastekwepatwptecrgvgfteaprgalghwaairdgkidlyqcvvpttwnasprdp
kgqigayeaalmntkmaipeqpleilrtlhsfdpclacsth

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >6galM (M:)
mstqyetqgytinnagrrlvvdpitriqghmrcevnindqnvitnavscgtmfrgleiil
qgrdprdawafvericgvctgvhalasvyaiedaigikvpdnaniirnimlatlwchdhl
vhfyqlagmdwidvldalkadprktselaqslsswpksspgyffdvqnrlkkfveggqlg
ifrngywghpqyklppeanlmgfahylealdfqreivkihavfggknphpnwivggmpca
inidesgavgavnmerlnlvqsiitrtadfinnvmipdalaigqfnkpwseigtglsdkc
vlsygafpdiandfgeksllmpggavingdfnnvlpvdlvdpqqvqefvdhawyrypndq
vgrhpfdgitdpwynpgdvkgsdtniqqlneqeryswikaprwrgnamevgplartliay
hkgdaatvesvdrmmsalnlplsgiqstlgrilcraheaqwaagklqyffdklmtnlkng
nlatastekwepatwptecrgvgfteaprgalghwaairdgkidlyqcvvpttwnasprd
pkgqigayeaalmntkmaipeqpleilrtlhsfdpclacsth

    Sequence, based on observed residues (ATOM records): (download) 
    >6galM (M:)
stqyetqgytinnagrrlvvdpitriqghmrcevnindqnvitnavscgtmfrgleiilq
grdprdawafvericgvctgvhalasvyaiedaigikvpdnaniirnimlatlwchdhlv
hfyqlagmdwidvldalkadprktselaqslsswpksspgyffdvqnrlkkfveggqlgi
frngywghpqyklppeanlmgfahylealdfqreivkihavfggknphpnwivggmpcai
nidesgavgavnmerlnlvqsiitrtadfinnvmipdalaigqfnkpwseigtglsdkcv
lsygafpdiandfgeksllmpggavingdfnnvlpvdlvdpqqvqefvdhawyrypndqv
grhpfdgitdpwynpgdvkgsdtniqqlneqeryswikaprwrgnamevgplartliayh
kgdaatvesvdrmmsalnlplsgiqstlgrilcraheaqwaagklqyffdklmtnlkngn
latastekwepatwptecrgvgfteaprgalghwaairdgkidlyqcvvpttwnasprdp
kgqigayeaalmntkmaipeqpleilrtlhsfdpclacsth

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >6galS (S:)
lenkpripvvwihglectcctesfirsahplakdvilslisldyddtlmaaagtqaeevf
ediitqyngkyilavegnpplgeqgmfcissgrpfieklkraaagasaiiawgtcaswgc
vqaarpnptqatpidkvitdkpiikvpgcppipdvmsaiitymvtfdrlpdvdrmgrplm
fygqrihdkcyrrahfdagefvqswdddaarkgyclykmgckgpttynacsstrwndgvs
fpiqsghgclgcaengfwdrgsfysrvvdipqmgthstadtvgltalgvvaaavgvhava
savdqrrrhnqqptetehqpgnedkqarshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6galS (S:)
kpripvvwihglectcctesfirsahplakdvilslisldyddtlmaaagtqaeevfedi
itqyngkyilavegnpplgeqgmfcissgrpfieklkraaagasaiiawgtcaswgcvqa
arpnptqatpidkvitdkpiikvpgcppipdvmsaiitymvtfdrlpdvdrmgrplmfyg
qrihdkcyrrahfdagefvqswdddaarkgyclykmgckgpttynacsstrwndgvsfpi
qsghgclgcaengfwdrgsfysrv

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >6galT (T:)
lenkpripvvwihglectcctesfirsahplakdvilslisldyddtlmaaagtqaeevf
ediitqyngkyilavegnpplgeqgmfcissgrpfieklkraaagasaiiawgtcaswgc
vqaarpnptqatpidkvitdkpiikvpgcppipdvmsaiitymvtfdrlpdvdrmgrplm
fygqrihdkcyrrahfdagefvqswdddaarkgyclykmgckgpttynacsstrwndgvs
fpiqsghgclgcaengfwdrgsfysrvvdipqmgthstadtvgltalgvvaaavgvhava
savdqrrrhnqqptetehqpgnedkqarshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6galT (T:)
enkpripvvwihglectcctesfirsahplakdvilslisldyddtlmaaagtqaeevfe
diitqyngkyilavegnpplgeqgmfcissgrpfieklkraaagasaiiawgtcaswgcv
qaarpnptqatpidkvitdkpiikvpgcppipdvmsaiitymvtfdrlpdvdrmgrplmf
ygqrihdkcyrrahfdagefvqswdddaarkgyclykmgckgpttynacsstrwndgvsf
piqsghgclgcaengfwdrgsfysrv