PDB entry 6g9q

View 6g9q on RCSB PDB site
Description: ternary complex of p14 tcr with murine mhc class i h-2 db in complex with self-antigen derived from dopamine monooxygenase.
Deposited on 2018-04-11, released 2019-04-24
The last revision was dated 2019-04-24, with a file datestamp of 2019-04-19.
Experiment type: XRAY
Resolution: 1.89 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H-2 class I histocompatibility antigen, D-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-D1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (Start-118)
      • variant (104)
  • Chain 'G':
    Compound: T cell receptor alpha variable 14-1,T-cell receptor alpha chain C region
    Species: Mus musculus [TaxId:10090]
    Gene: Tcra
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0G2JF94 (Start-98)
      • linker (99-116)
    • Uniprot P01849 (117-End)
      • conflict (118)
      • conflict (123)
      • conflict (133)
      • conflict (165)
  • Chain 'H':
    Compound: T-cell receptor beta chain V region C5,T-cell receptor beta-1 chain C region
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04213 (0-110)
      • conflict (92-93)
      • conflict (96-97)
      • conflict (99)
      • conflict (103)
      • conflict (108)
    • Uniprot P01852 (111-End)
      • conflict (132)
      • conflict (167)
      • conflict (181)
  • Chain 'P':
    Compound: Dopamine beta-hydroxylase
    Species: Mus musculus, synthetic [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q64237 (0-8)
      • engineered mutation (2)
  • Heterogens: GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6g9qA (A:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwep

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6g9qB (B:)
marsvtlvflvlvsltglmgiqktpqiqvysrhppengkpnilncyvtqfhpphieiqml
kngkkipkvemsdmsfskdwsfyilahteftptetdtyacrvkhdsmaepktvywdrdm

    Sequence, based on observed residues (ATOM records):
    >6g9qB (B:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6g9qG (G:)
qqkekhdqqqvrqspqsltvweggttvltcsyedstfnyfpwyqqfpgegpallisilsv
sdkkedgrfttffnkrekklslhiidsqpgdsatyfcaalygnekitfgagtkltikpni
qnpdpavyqlkdpksqdstlclftdfdsqinvpktmesgtfitdkcvldmkamdsksnga
iawsnqtsftcqdifketnatypss

    Sequence, based on observed residues (ATOM records):
    >6g9qG (G:)
qqvrqspqsltvweggttvltcsyedstfnyfpwyqqfpgegpallisilsvsdkkedgr
fttffnkrekklslhiidsqpgdsatyfcaalygnekitfgagtkltikpniqnpdpavy
qlkdpksqdstlclftdfdsqinvpktmesgtfitdkcvldmkamdsksngaiawsnqts
ftcqdifk

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6g9qH (H:)
avtqsprskvavtggkvtlschqtnnhdymywyrqdtghglrlihysyvadstekgdipd
gykasrpsqenfslilelaslsqtavyfcassdaggrntlyfgagtrlsvledlrnvtpp
kvslfepskaeisnkqkatlvclargffpdhvelswwvngkevhsgvctdpqaykesnys
yslssrlrvsatfwhnprnhfrcqvqfhglseedkwpegspkpvtqnisaeawgradc

    Sequence, based on observed residues (ATOM records):
    >6g9qH (H:)
avtqsprskvavtggkvtlschqtnnhdymywyrqdtghglrlihysyvadstekgdipd
gykasrpsqenfslilelaslsqtavyfcassdaggrntlyfgagtrlsvledlrnvtpp
kvslfepskaeisnkqkatlvclargffpdhvelswwvngkevhsgvctdpqaykesnys
yslssrlrvsatfwhnprnhfrcqvqfhglseedkwpegspkpvtqnisaeawgrad

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >6g9qP (P:)
kapydyapi