PDB entry 6g88

View 6g88 on RCSB PDB site
Description: crystal structure of enterococcus faecium d63r penicillin-binding protein 5 (pbp5fm)
Deposited on 2018-04-08, released 2019-04-24
The last revision was dated 2019-04-24, with a file datestamp of 2019-04-19.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Low affinity penicillin-binding protein 5 (PBP5)
    Species: Enterococcus faecium [TaxId:1352]
    Gene: pbp5
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q47759 (Start-646)
      • expression tag (647)
  • Chain 'B':
    Compound: Low affinity penicillin-binding protein 5 (PBP5)
    Species: Enterococcus faecium [TaxId:1352]
    Gene: pbp5
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q47759 (Start-646)
      • expression tag (647)
  • Chain 'C':
    Compound: Low affinity penicillin-binding protein 5 (PBP5)
    Species: Enterococcus faecium [TaxId:1352]
    Gene: pbp5
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q47759 (Start-646)
      • expression tag (647)
  • Heterogens: RB6, SO4

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6g88A (A:)
mgrhyqetqaveagektveqfvqalnkgdynkaagmaskkaanksalsekeilekyqniy
gaadvkgleisnlkvdkkddstysfsykakmntslgelkdlsykgtldrndgkttinwqp
nlvfpemegndkvslttqeatrgnildrngeplattgklkqlgvvpsklgdgdektanik
aiasafdltedainqaisqswvqpdyfvplkiidgatpelpagatiqevdgryyplgeaa
aqligyvgditaedidknpelssngkigrsglemafdkdlrgttggklsitdtdgvekkv
liehevqngkdikltidakaqktafdslggkagstvattpktgdllalasspsydpnkmt
ngisqedykayeenpeqpfisrfatgyapgstfkmitaaigldngtidpnevltinglkw
qkdsswgsyqvtrvsdvshvdlktaliysdniymaqetlkmgeknfragldkfifgedld
lpismnpaqisneesfnsdilladtgygqgellinpiqqaamysvfanngtlvypkliad
ketkdkknvigetavqtivpdlrevvqdvngtahslsalgiplaaktgtaeikekqdekg
kensflfafnpdnqgymmvsmlenkedddsatkrapellqylnqnyqle

    Sequence, based on observed residues (ATOM records):
    >6g88A (A:)
etqaveagektveqfvqalnkgdynkaagmaskkaanksalsekeilekyqniygaadvk
gleisnlkvdkkddstysfsykakmntslgelkdlsykgtldrndgkttinwqpnlvfpe
megndkvslttqeatrgnildrngeplattgklkqlgvvpsklgdgdektanikaiasaf
dltedainqaisqswvqpdyfvplkiatiqevdgryyplgeaaaqligyvgditaedidk
npelssngkigrsglemafdkdlrgttggklsitdtdgvekkvliehevqngkdikltid
akaqktafdslggkagstvattpktgdllalasspsydpnkmtngisqedykayeenpeq
pfisrfatgyapgstfkmitaaigldngtidpnevltinglkwqkdsswgsyqvtrvsdv
shvdlktaliysdniymaqetlkmgeknfragldkfifgedldlpismnpaqisneesfn
sdilladtgygqgellinpiqqaamysvfanngtlvypkliadketkdkknvigetavqt
ivpdlrevvqdvngtahslsalgiplaaktgtaekensflfafnpdnqgymmvsmlenke
dddsatkrapellqylnqnyql

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6g88B (B:)
mgrhyqetqaveagektveqfvqalnkgdynkaagmaskkaanksalsekeilekyqniy
gaadvkgleisnlkvdkkddstysfsykakmntslgelkdlsykgtldrndgkttinwqp
nlvfpemegndkvslttqeatrgnildrngeplattgklkqlgvvpsklgdgdektanik
aiasafdltedainqaisqswvqpdyfvplkiidgatpelpagatiqevdgryyplgeaa
aqligyvgditaedidknpelssngkigrsglemafdkdlrgttggklsitdtdgvekkv
liehevqngkdikltidakaqktafdslggkagstvattpktgdllalasspsydpnkmt
ngisqedykayeenpeqpfisrfatgyapgstfkmitaaigldngtidpnevltinglkw
qkdsswgsyqvtrvsdvshvdlktaliysdniymaqetlkmgeknfragldkfifgedld
lpismnpaqisneesfnsdilladtgygqgellinpiqqaamysvfanngtlvypkliad
ketkdkknvigetavqtivpdlrevvqdvngtahslsalgiplaaktgtaeikekqdekg
kensflfafnpdnqgymmvsmlenkedddsatkrapellqylnqnyqle

    Sequence, based on observed residues (ATOM records):
    >6g88B (B:)
etqaveagektveqfvqalnkgdynkaagmaskkaanksalsekeilekyqniygaadvk
gleisnlkvdkkddstysfsykakmntslgelkdlsykgtldrndgkttinwqpnlvfpe
megndkvslttqeatrgnildrngeplattgklkqlyfvplkiatiqevdgryyplgeaa
aqligyvgditaedidknpelssngkigrsglemafdkdlrgttggklsitdtdgvekkv
liehevqngkdikltidakaqktafdslggkagstvattpktgdllalasspsydpnkmt
ngisqedykayeenpeqpfisrfatgyapgstfkmitaaigldngtidpnevltinglkw
qkdsswgsyqvtrvsdvshvdlktaliysdniymaqetlkmgeknfragldkfifgedld
lpismnpaqisneesfnsdilladtgygqgellinpiqqaamysvfanngtlvypkliad
ketkdkknvigetavqtivpdlrevvqdvngtahslsalgiplaaktgtaeikensflfa
fnpdnqgymmvsmlenkedddsatkrapellqylnqnyql

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6g88C (C:)
mgrhyqetqaveagektveqfvqalnkgdynkaagmaskkaanksalsekeilekyqniy
gaadvkgleisnlkvdkkddstysfsykakmntslgelkdlsykgtldrndgkttinwqp
nlvfpemegndkvslttqeatrgnildrngeplattgklkqlgvvpsklgdgdektanik
aiasafdltedainqaisqswvqpdyfvplkiidgatpelpagatiqevdgryyplgeaa
aqligyvgditaedidknpelssngkigrsglemafdkdlrgttggklsitdtdgvekkv
liehevqngkdikltidakaqktafdslggkagstvattpktgdllalasspsydpnkmt
ngisqedykayeenpeqpfisrfatgyapgstfkmitaaigldngtidpnevltinglkw
qkdsswgsyqvtrvsdvshvdlktaliysdniymaqetlkmgeknfragldkfifgedld
lpismnpaqisneesfnsdilladtgygqgellinpiqqaamysvfanngtlvypkliad
ketkdkknvigetavqtivpdlrevvqdvngtahslsalgiplaaktgtaeikekqdekg
kensflfafnpdnqgymmvsmlenkedddsatkrapellqylnqnyqle

    Sequence, based on observed residues (ATOM records):
    >6g88C (C:)
tqaveagektveqfvqalnkgdynkaagmaskkaanksalsekeilekyqniygaadvkg
leisnlkvdkkddstysfsykakmntslgelkdlsykgtldrndgkttinwqpnlvfpem
egndkvslttqeatrgnildrngeplattgklkqlgvvdainqaisqswvqpdyfvplki
atiqevdgryyplgeaaaqligyvgditaedidknpelssngkigrsglemafdkdlrgt
tggklsitdtdgvekkvliehevqngkdikltidakaqktafdslggkagstvattpktg
dllalasspsydpnkmtngisqedykayeenpeqpfisrfatgyapgstfkmitaaigld
ngtidpnevltinglkwqkdsswgsyqvtrvsdvshvdlktaliysdniymaqetlkmge
knfragldkfifgedldlpismnpaqisneesfnsdilladtgygqgellinpiqqaamy
svfanngtlvypkliadketkdkknvigetavqtivpdlrevvqdvngtahslsalgipl
aaktgtaeikensflfafnpdnqgymmvsmlenkedddsatkrapellqylnqnyql