PDB entry 6g5m

View 6g5m on RCSB PDB site
Description: the structure of thiocyanate dehydrogenase from thioalkalivibrio paradoxus complex with cu(i) ions.
Deposited on 2018-03-29, released 2019-04-10
The last revision was dated 2019-04-10, with a file datestamp of 2019-04-05.
Experiment type: XRAY
Resolution: 2.31 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Thiocyanate Dehydrogenase
    Species: Thioalkalivibrio paradoxus ARh 1 [TaxId:713585]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Thiocyanate Dehydrogenase
    Species: Thioalkalivibrio paradoxus ARh 1 [TaxId:713585]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Thiocyanate Dehydrogenase
    Species: Thioalkalivibrio paradoxus ARh 1 [TaxId:713585]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Thiocyanate Dehydrogenase
    Species: Thioalkalivibrio paradoxus ARh 1 [TaxId:713585]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CU, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6g5mA (A:)
kyvkvqdfydqlgkyvlvapgkfsgtvaatdlstgwtmawlaawnygdtcpimhhmaafp
spdpykefefvvntqggknlfiygvpvtvedpgegmkiyrikydgtrmnlqrdaaevsgl
glgvhvtitpeadgyavgdgqkdicaefdretdmvryawafdwdpnvkdlkrawldggtm
tikrlkptlpggrydlqgskgnkidwelvpggelaiedgkvsgdrplhsvandalvfdpr
gkwavasmrlpgvcvvfdrenqvpvavlagpkgtpsqfqlvkvdddtwtvdipevisagh
qagfspdgqsflfmnslrqnnimvwdssnhddpttwekkavvespdwrgaypntfhmvft
pdakkiyvtmwwpsptpngiavidavnwevlkevdlgpdmhtlaitydgkfvvgtlsgyq
ntasaivvmetetdevlgflpspmghhdnvivprtledlrisrsttt

    Sequence, based on observed residues (ATOM records):
    >6g5mA (A:)
kyvkvqdfydqlgkyvlvapgkfsgtvaatdlstgwtmawlaawnygdtcpimhhmaafp
spdpykefefvvntqggknlfiygvpvtvgegmkiyrikydgtrmnlqrdaaevsglglg
vhvtitpeadgyavgdgqkdicaefdretdmvryawafdwdpnvkdlkrawldggtmtik
rlkptlpggrydlqgskgnkidwelvpggelaiedgkvsgdrplhsvandalvfdprgkw
avasmrlpgvcvvfdrenqvpvavlagpkgtpsqfqlvkvdddtwtvdipevisaghqag
fspdgqsflfmnslrqnnimvwdssnhddpttwekkavvespdwrgaypntfhmvftpda
kkiyvtmwwpsptpngiavidavnwevlkevdlgpdmhtlaitydgkfvvgtlsgyqnta
saivvmetetdevlgflpspmghhdnvivprtledlrisrsttt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6g5mB (B:)
kyvkvqdfydqlgkyvlvapgkfsgtvaatdlstgwtmawlaawnygdtcpimhhmaafp
spdpykefefvvntqggknlfiygvpvtvedpgegmkiyrikydgtrmnlqrdaaevsgl
glgvhvtitpeadgyavgdgqkdicaefdretdmvryawafdwdpnvkdlkrawldggtm
tikrlkptlpggrydlqgskgnkidwelvpggelaiedgkvsgdrplhsvandalvfdpr
gkwavasmrlpgvcvvfdrenqvpvavlagpkgtpsqfqlvkvdddtwtvdipevisagh
qagfspdgqsflfmnslrqnnimvwdssnhddpttwekkavvespdwrgaypntfhmvft
pdakkiyvtmwwpsptpngiavidavnwevlkevdlgpdmhtlaitydgkfvvgtlsgyq
ntasaivvmetetdevlgflpspmghhdnvivprtledlrisrsttt

    Sequence, based on observed residues (ATOM records):
    >6g5mB (B:)
kyvkvqdfydqlgkyvlvapgkfsgtvaatdlstgwtmawlaawnygdtcpimhhmaafp
spdpykefefvvntqggknlfiygvpvtvdpgegmkiyrikydgtrmnlqrdaaevsglg
lgvhvtitpeadgyavgdgqkdicaefdretdmvryawafdwdpnvkdlkrawldggtmt
ikrlkptlpggrydlqgskgnkidwelvpggelaiedgkvsgdrplhsvandalvfdprg
kwavasmrlpgvcvvfdrenqvpvavlagpkgtpsqfqlvkvdddtwtvdipevisaghq
agfspdgqsflfmnslrqnnimvwdssnhddpttwekkavvespdwrgaypntfhmvftp
dakkiyvtmwwpsptpngiavidavnwevlkevdlgpdmhtlaitydgkfvvgtlsgyqn
tasaivvmetetdevlgflpspmghhdnvivprtledlrisrsttt

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6g5mC (C:)
kyvkvqdfydqlgkyvlvapgkfsgtvaatdlstgwtmawlaawnygdtcpimhhmaafp
spdpykefefvvntqggknlfiygvpvtvedpgegmkiyrikydgtrmnlqrdaaevsgl
glgvhvtitpeadgyavgdgqkdicaefdretdmvryawafdwdpnvkdlkrawldggtm
tikrlkptlpggrydlqgskgnkidwelvpggelaiedgkvsgdrplhsvandalvfdpr
gkwavasmrlpgvcvvfdrenqvpvavlagpkgtpsqfqlvkvdddtwtvdipevisagh
qagfspdgqsflfmnslrqnnimvwdssnhddpttwekkavvespdwrgaypntfhmvft
pdakkiyvtmwwpsptpngiavidavnwevlkevdlgpdmhtlaitydgkfvvgtlsgyq
ntasaivvmetetdevlgflpspmghhdnvivprtledlrisrsttt

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6g5mD (D:)
kyvkvqdfydqlgkyvlvapgkfsgtvaatdlstgwtmawlaawnygdtcpimhhmaafp
spdpykefefvvntqggknlfiygvpvtvedpgegmkiyrikydgtrmnlqrdaaevsgl
glgvhvtitpeadgyavgdgqkdicaefdretdmvryawafdwdpnvkdlkrawldggtm
tikrlkptlpggrydlqgskgnkidwelvpggelaiedgkvsgdrplhsvandalvfdpr
gkwavasmrlpgvcvvfdrenqvpvavlagpkgtpsqfqlvkvdddtwtvdipevisagh
qagfspdgqsflfmnslrqnnimvwdssnhddpttwekkavvespdwrgaypntfhmvft
pdakkiyvtmwwpsptpngiavidavnwevlkevdlgpdmhtlaitydgkfvvgtlsgyq
ntasaivvmetetdevlgflpspmghhdnvivprtledlrisrsttt

    Sequence, based on observed residues (ATOM records):
    >6g5mD (D:)
kyvkvqdfydqlgkyvlvapgkfsgtvaatdlstgwtmawlaawnygdtcpimhhmaafp
spdpykefefvvntqggknlfiygvpvtvedpgegmkiyrikydgtrmnlqrdaaevsgl
glgvhvtitpeadgyavgdgqkdicaefdretdmvryawafdwdpnvkdlkrawldggtm
tikrlkptlpggrydlqgskgnkidwelvpggelaiedgkvsgdrplhsvandalvfdpr
gkwavasmrlpgvcvvfdrenqvpvavlagpkgtpsqfqlvkvdddtwtvdipevisagh
qagfspdgqsflfmnslrqnnimvwdssnhddpttwekkavvespdwgaypntfhmvftp
dakkiyvtmwwpsptpngiavidavnwevlkevdlgpdmhtlaitydgkfvvgtlsgyqn
tasaivvmetetdevlgflpspmghhdnvivprtledlrisrsttt