PDB entry 6g3b

View 6g3b on RCSB PDB site
Description: avaii restriction endonuclease in complex with an rna/dna hybrid
Deposited on 2018-03-24, released 2019-04-10
The last revision was dated 2020-05-20, with a file datestamp of 2020-05-15.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Type ii site-specific deoxyribonuclease
    Species: Nostoc sp. PCC 7120 [TaxId:103690]
    Gene: alr0933
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8YYB7 (2-229)
      • expression tag (1)
      • expression tag (230)
  • Chain 'B':
    Compound: Type ii site-specific deoxyribonuclease
    Species: Nostoc sp. PCC 7120 [TaxId:103690]
    Gene: alr0933
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8YYB7 (2-229)
      • expression tag (230)
  • Chain 'C':
    Compound: RNA (5'-r(p*gp*up*ap*gp*gp*ap*cp*cp*ap*up*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: DNA (5'-d(*cp*cp*ap*tp*gp*gp*tp*cp*cp*tp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6g3bA (A:)
mgskfiqnaaeiakkamdsvdpslsekftivirfltdnpdaasalkgkersivgteeyii
asatnfkkgrdprtplppstipdemvsvilnkyfevpseelekaeewhrlsmgaenivgd
lleryiaeviephgwiwcsgsmvravdfiycdsenvwqslqvknrdntensssaairhgt
pikkwfrtfskkrgdnwdkfpslegkenlsekgfklyvekylsalraikalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6g3bA (A:)
gskfiqnaaeiakkamdsvdpslsekftivirfltdnpdaasalsivgteeyiiasatnf
kkgrdprtplppstipdemvsvilnkyfevpseelekaeewhrlsmgaenivgdlleryi
aeviephgwiwcsgsmvravdfiycdsenvwqslqvknrdntensssaairhgtpikkwf
rtfskkrgdnwdkfpslegkenlsekgfklyvekylsalraikal

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6g3bB (B:)
mgskfiqnaaeiakkamdsvdpslsekftivirfltdnpdaasalkgkersivgteeyii
asatnfkkgrdprtplppstipdemvsvilnkyfevpseelekaeewhrlsmgaenivgd
lleryiaeviephgwiwcsgsmvravdfiycdsenvwqslqvknrdntensssaairhgt
pikkwfrtfskkrgdnwdkfpslegkenlsekgfklyvekylsalraikalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6g3bB (B:)
skfiqnaaeiakkamdsvdpslsekftivirfltdnpdaasalrsivgteeyiiasatnf
kkgrdprtplppstipdemvsvilnkyfevpseelekaeewhrlsmgaenivgdlleryi
aeviephgwiwcsgsmvravdfiycdsenvwqslqvknrdntensssaairhgtpikkwf
rtfskkrgdnwdkfpslegkenlsekgfklyvekylsalraikal

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.