PDB entry 6g1f

View 6g1f on RCSB PDB site
Description: Crystal structure of D-phenylglycine aninotransferase (D-PhgAT) from Pseudomonas stutzeri with PLP internal aldimine
Class: transferase
Keywords: aminotransferase, PLP, phenylglycine, TRANSFERASE
Deposited on 2018-03-21, released 2019-04-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-10-21, with a file datestamp of 2020-10-16.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-phenylglycine aminotransferase
    Species: Pseudomonas stutzeri [TaxId:316]
    Gene: dpgA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6VY99 (12-End)
      • expression tag (11)
    Domains in SCOPe 2.08: d6g1fa1, d6g1fa2
  • Chain 'B':
    Compound: D-phenylglycine aminotransferase
    Species: Pseudomonas stutzeri [TaxId:316]
    Gene: dpgA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6VY99 (12-End)
      • expression tag (11)
    Domains in SCOPe 2.08: d6g1fb1, d6g1fb2
  • Chain 'C':
    Compound: D-phenylglycine aminotransferase
    Species: Pseudomonas stutzeri [TaxId:316]
    Gene: dpgA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6g1fc_
  • Chain 'D':
    Compound: D-phenylglycine aminotransferase
    Species: Pseudomonas stutzeri [TaxId:316]
    Gene: dpgA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6VY99 (12-End)
      • expression tag (11)
    Domains in SCOPe 2.08: d6g1fd1, d6g1fd2
  • Chain 'E':
    Compound: D-phenylglycine aminotransferase
    Species: Pseudomonas stutzeri [TaxId:316]
    Gene: dpgA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6VY99 (12-End)
      • expression tag (11)
    Domains in SCOPe 2.08: d6g1fe1, d6g1fe2
  • Chain 'F':
    Compound: D-phenylglycine aminotransferase
    Species: Pseudomonas stutzeri [TaxId:316]
    Gene: dpgA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6VY99 (12-End)
      • expression tag (11)
    Domains in SCOPe 2.08: d6g1ff1, d6g1ff2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6g1fA (A:)
mshhhhhhgssgsilndykrktegsvfwaqrarsvmpdgvtadtrvfdphglfisdaqgv
hktdvdgnvyldffgghgalvlghghprvnaaiaealshgvqyaashplevrwaerivaa
fpsirklrftgsgtettllalrvaraftgrrmilriathyhgwhdfsasgynshfdgqpa
pgvlpeiakntllirpddiegmrevfaqhgsdiaafiaepvgshfgvtpvsdsflregae
larqygalfildevisgfrvgnhgmqalldvqpdltclakasagglpggilggredvmgv
lsrgsdrkvlhqgtftgnpitaaaaiaaidtileddvcakindlgqfareamnhlfarkg
lnwlaygrfsgfhlmpglppnttdtgsitraevarpdvkmiaamrmalilegvdiggrgs
vflsaqherehvehlvttfdrvldrladenllswqptnlsgnqs

    Sequence, based on observed residues (ATOM records): (download) 
    >6g1fA (A:)
gsilndykrktegsvfwaqrarsvmpdgvtadtrvfdphglfisdaqgvhktdvdgnvyl
dffgghgalvlghghprvnaaiaealshgvqyaashplevrwaerivaafpsirklrftg
sgtettllalrvaraftgrrmilriathyhgwhdfsasgynshfdgqpapgvlpeiaknt
llirpddiegmrevfaqhgsdiaafiaepvgshfgvtpvsdsflregaelarqygalfil
devisgfrvgnhgmqalldvqpdltclakasagglpggilggredvmgvlsrgsdrkvlh
qgtftgnpitaaaaiaaidtileddvcakindlgqfareamnhlfarkglnwlaygrfsg
fhlmpglppnttdtgsitraevarpdvkmiaamrmalilegvdiggrgsvflsaqhereh
vehlvttfdrvldrladenllsw

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6g1fB (B:)
mshhhhhhgssgsilndykrktegsvfwaqrarsvmpdgvtadtrvfdphglfisdaqgv
hktdvdgnvyldffgghgalvlghghprvnaaiaealshgvqyaashplevrwaerivaa
fpsirklrftgsgtettllalrvaraftgrrmilriathyhgwhdfsasgynshfdgqpa
pgvlpeiakntllirpddiegmrevfaqhgsdiaafiaepvgshfgvtpvsdsflregae
larqygalfildevisgfrvgnhgmqalldvqpdltclakasagglpggilggredvmgv
lsrgsdrkvlhqgtftgnpitaaaaiaaidtileddvcakindlgqfareamnhlfarkg
lnwlaygrfsgfhlmpglppnttdtgsitraevarpdvkmiaamrmalilegvdiggrgs
vflsaqherehvehlvttfdrvldrladenllswqptnlsgnqs

    Sequence, based on observed residues (ATOM records): (download) 
    >6g1fB (B:)
gsilndykrktegsvfwaqrarsvmpdgvtadtrvfdphglfisdaqgvhktdvdgnvyl
dffgghgalvlghghprvnaaiaealshgvqyaashplevrwaerivaafpsirklrftg
sgtettllalrvaraftgrrmilriathyhgwhdfsasgynshfdgqpapgvlpeiaknt
llirpddiegmrevfaqhgsdiaafiaepvgshfgvtpvsdsflregaelarqygalfil
devisgfrvgnhgmqalldvqpdltclakasagglpggilggredvmgvlsrgsdrkvlh
qgtftgnpitaaaaiaaidtileddvcakindlgqfareamnhlfarkglnwlaygrfsg
fhlmpglppnttdtgsitraevarpdvkmiaamrmalilegvdiggrgsvflsaqhereh
vehlvttfdrvldrladenll

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6g1fC (C:)
mshhhhhhgssgsilndykrktegsvfwaqrarsvmpdgvtadtrvfdphglfisdaqgv
hktdvdgnvyldffgghgalvlghghprvnaaiaealshgvqyaashplevrwaerivaa
fpsirklrftgsgtettllalrvaraftgrrmilriathyhgwhdfsasgynshfdgqpa
pgvlpeiakntllirpddiegmrevfaqhgsdiaafiaepvgshfgvtpvsdsflregae
larqygalfildevisgfrvgnhgmqalldvqpdltclakasagglpggilggredvmgv
lsrgsdrkvlhqgtftgnpitaaaaiaaidtileddvcakindlgqfareamnhlfarkg
lnwlaygrfsgfhlmpglppnttdtgsitraevarpdvkmiaamrmalilegvdiggrgs
vflsaqherehvehlvttfdrvldrladenllswqptnlsgnqs

    Sequence, based on observed residues (ATOM records): (download) 
    >6g1fC (C:)
silndykrktegsvfwaqrarsvmpdgvtadtrvfdphglfisdaqgvhktdvdgnvyld
ffgghgalvlghghprvnaaiaealshgvqyaashplevrwaerivaafpsirklrftgs
gtettllalrvaraftgrrmilriathyhgwhdfsasgynshfdgqpapgvlpeiakntl
lirpddiegmrevfaqhgsdiaafiaepvgshfgvtpvsdsflregaelarqygalfild
evisgfrvgnhgmqalldvqpdltclakasagglpggilggredvmgvlsrgsdrkvlhq
gtftgnpitaaaaiaaidtileddvcakindlgqfareamnhlfarkglnwlaygrfsgf
hlmpglppnttdtgsitraevarpdvkmiaamrmalilegvdiggrgsvflsaqherehv
ehlvttfdrvldrladenll

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6g1fD (D:)
mshhhhhhgssgsilndykrktegsvfwaqrarsvmpdgvtadtrvfdphglfisdaqgv
hktdvdgnvyldffgghgalvlghghprvnaaiaealshgvqyaashplevrwaerivaa
fpsirklrftgsgtettllalrvaraftgrrmilriathyhgwhdfsasgynshfdgqpa
pgvlpeiakntllirpddiegmrevfaqhgsdiaafiaepvgshfgvtpvsdsflregae
larqygalfildevisgfrvgnhgmqalldvqpdltclakasagglpggilggredvmgv
lsrgsdrkvlhqgtftgnpitaaaaiaaidtileddvcakindlgqfareamnhlfarkg
lnwlaygrfsgfhlmpglppnttdtgsitraevarpdvkmiaamrmalilegvdiggrgs
vflsaqherehvehlvttfdrvldrladenllswqptnlsgnqs

    Sequence, based on observed residues (ATOM records): (download) 
    >6g1fD (D:)
gsilndykrktegsvfwaqrarsvmpdgvtadtrvfdphglfisdaqgvhktdvdgnvyl
dffgghgalvlghghprvnaaiaealshgvqyaashplevrwaerivaafpsirklrftg
sgtettllalrvaraftgrrmilriathyhgwhdfsasgynshfdgqpapgvlpeiaknt
llirpddiegmrevfaqhgsdiaafiaepvgshfgvtpvsdsflregaelarqygalfil
devisgfrvgnhgmqalldvqpdltclakasagglpggilggredvmgvlsrgsdrkvlh
qgtftgnpitaaaaiaaidtileddvcakindlgqfareamnhlfarkglnwlaygrfsg
fhlmpglppnttdtgsitraevarpdvkmiaamrmalilegvdiggrgsvflsaqhereh
vehlvttfdrvldrladenll

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6g1fE (E:)
mshhhhhhgssgsilndykrktegsvfwaqrarsvmpdgvtadtrvfdphglfisdaqgv
hktdvdgnvyldffgghgalvlghghprvnaaiaealshgvqyaashplevrwaerivaa
fpsirklrftgsgtettllalrvaraftgrrmilriathyhgwhdfsasgynshfdgqpa
pgvlpeiakntllirpddiegmrevfaqhgsdiaafiaepvgshfgvtpvsdsflregae
larqygalfildevisgfrvgnhgmqalldvqpdltclakasagglpggilggredvmgv
lsrgsdrkvlhqgtftgnpitaaaaiaaidtileddvcakindlgqfareamnhlfarkg
lnwlaygrfsgfhlmpglppnttdtgsitraevarpdvkmiaamrmalilegvdiggrgs
vflsaqherehvehlvttfdrvldrladenllswqptnlsgnqs

    Sequence, based on observed residues (ATOM records): (download) 
    >6g1fE (E:)
gsilndykrktegsvfwaqrarsvmpdgvtadtrvfdphglfisdaqgvhktdvdgnvyl
dffgghgalvlghghprvnaaiaealshgvqyaashplevrwaerivaafpsirklrftg
sgtettllalrvaraftgrrmilriathyhgwhdfsasgynshfpapgvlpeiakntlli
rpddiegmrevfaqhgsdiaafiaepvgshfgvtpvsdsflregaelarqygalfildev
isgfrvgnhgmqalldvqpdltclakasagglpggilggredvmgvlsrgsdrkvlhqgt
ftgnpitaaaaiaaidtileddvcakindlgqfareamnhlfarkglnwlaygrfsgfhl
mpglppnttdtgsitraevarpdvkmiaamrmalilegvdiggrgsvflsaqherehveh
lvttfdrvldrladenll

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6g1fF (F:)
mshhhhhhgssgsilndykrktegsvfwaqrarsvmpdgvtadtrvfdphglfisdaqgv
hktdvdgnvyldffgghgalvlghghprvnaaiaealshgvqyaashplevrwaerivaa
fpsirklrftgsgtettllalrvaraftgrrmilriathyhgwhdfsasgynshfdgqpa
pgvlpeiakntllirpddiegmrevfaqhgsdiaafiaepvgshfgvtpvsdsflregae
larqygalfildevisgfrvgnhgmqalldvqpdltclakasagglpggilggredvmgv
lsrgsdrkvlhqgtftgnpitaaaaiaaidtileddvcakindlgqfareamnhlfarkg
lnwlaygrfsgfhlmpglppnttdtgsitraevarpdvkmiaamrmalilegvdiggrgs
vflsaqherehvehlvttfdrvldrladenllswqptnlsgnqs

    Sequence, based on observed residues (ATOM records): (download) 
    >6g1fF (F:)
gsilndykrktegsvfwaqrarsvmpdgvtadtrvfdphglfisdaqgvhktdvdgnvyl
dffgghgalvlghghprvnaaiaealshgvqyaashplevrwaerivaafpsirklrftg
sgtettllalrvaraftgrrmilriathyhgwhdfsasgynshfdgqpapgvlpeiaknt
llirpddiegmrevfaqhgsdiaafiaepvgshfgvtpvsdsflregaelarqygalfil
devisgfrvgnhgmqalldvqpdltclakasagglpggilggredvmgvlsrgsdrkvlh
qgtftgnpitaaaaiaaidtileddvcakindlgqfareamnhlfarkglnwlaygrfsg
fhlmpglppnttdtgsitraevarpdvkmiaamrmalilegvdiggrgsvflsaqhereh
vehlvttfdrvldrlade